CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012387.1-P	Field mustard	cytosol	91.24	92.42
CDY28475	Canola	cytosol	88.89	88.32
CDX99652	Canola	cytosol, extracellular, nucleus	29.49	58.47
CDY15942	Canola	cytosol	45.51	57.88
CDX89734	Canola	nucleus	20.51	54.24
KRG91141	Soybean	cytosol	35.26	35.87
KRH35641	Soybean	cytosol	34.83	35.13
PGSC0003DMT400054952	Potato	cytosol	33.33	31.08
VIT_03s0088g00330.t01	Wine grape	cytosol	36.54	30.37
Solyc01g006990.2.1	Tomato	cytosol, mitochondrion	33.97	29.07
GSMUA_Achr8P05000_001	Banana	cytosol, mitochondrion	30.56	27.88
GSMUA_Achr8P04990_001	Banana	mitochondrion	27.35	26.34
Os03t0232000-01	Rice	cytosol	25.43	25.05
KRH75483	Soybean	plastid	14.53	24.64
EER95223	Sorghum	mitochondrion	24.36	24.0
Zm00001d028296_P001	Maize	mitochondrion	24.36	23.75
TraesCS4A01G060300.1	Wheat	cytosol	24.57	23.0
TraesCS4D01G237200.1	Wheat	cytosol	24.57	22.86
TraesCS4B01G235800.1	Wheat	cytosol	24.36	22.8

Protein Annotations

EnsemblPlants:CDY25801	EnsemblPlantsGene:GSBRNA2T00033206001	Gene3D:1.20.1280.50	Gene3D:3.40.1000.30	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR15537	PANTHER:PTHR15537:SF2
PFAM:PF12937	PFscan:PS50181	ProteinID:CDY25801	ProteinID:CDY25801.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0004EF11E2	UniProt:A0A078GK80	MapMan:19.2.2.8.1.4.6	:	:

Description

BnaA07g09810DBnaA07g09810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GK80]

Coordinates

chrLK032180:-:361706..363390

Molecular Weight (calculated)

51885.5 Da

IEP (calculated)

7.044

GRAVY (calculated)

-0.270

Length

468 amino acids

Sequence
(BLAST)

001: MKLRLRRHET RETLKLELPD SITLHDLRQR INEPSPSSVH LSLNRKDELL APSPDHTLRS LGVTSGDLIY YSLVPSAFAA SLEEIALASS SEVKSQNEMG
101: IGFAASDVDL NIQDPEEVST GEASGHAPDP MDVEELDVEL AAAGSKRLTE PFFLKKVLLE KSGDTSELTT VAMSVHAVML ESGFVLFNPD CSDNKFSFSK
201: ELLTVSLKYT LPELMTSDKG VESVTVRFQS LSDKVVVYGS LGGKLQRLYL DKRRFVPVID LVMDTLKSDK DGSSSIYKEM FMFWRMVKDG LVIPLLIGLC
301: DKSGLELPPC LMRLPTELKL KILESLPGAS VAKMACVCTE IRYLATDNDL WKQKCLEEAK HLVVDGAGDS VNWKAKFAAF WRQYQRQVSS SRRTLRNFGM
401: GRNRIPNPFP RIPDPDHFGW INGGGLPGPG PFIMHPGQPA GRLGGRRLGR SFSPRCNLGG NNYQQHGE

Best Arabidopsis Sequence Match ( AT1G23780.1 )
(BLAST)

001: MKLRLRHHET RETLKLELAD ADTLHDLRRR INPTVPSSVH LSLNRKDELI TPSPEDTLRS LGLISGDLIY FSLEAGESSN WKLRDSETVA SQSESNQTSV
101: HDSIGFAEVD VVPDQAKSNP NTSVEDPEGD ISGMEGPEPM DVEQLDMELA AAGSKRLSEP FFLKNILLEK SGDTSELTTL ALSVHAVMLE SGFVLLNHGS
201: DKFNFSKELL TVSLRYTLPE LIKSKDTNTI ESVSVKFQNL GPVVVVYGTV GGSSGRVHMN LDKRRFVPVI DLVMDTSTSD EEGSSSIYRE VFMFWRMVKD
301: RLVIPLLIGI CDKAGLEPPP CLMRLPTELK LKILELLPGV SIGNMACVCT EMRYLASDND LWKQKCLEEV NNFVVTEAGD SVNWKARFAT FWRQKQLAAA
401: SDTFWRQNQL GRRNISTGRS GIRFPRIIGD PPFTWFNGDR MHGSIGIHPG QSARGLGRRT WGQLFTPRCN LGGLN

Arabidopsis Description

SKIP22F-box family protein [Source:UniProtKB/TrEMBL;Acc:C1PI94]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.