Subcellular Localization
min:
: max
Winner_takes_all: extracellular, vacuole, mitochondrion, plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
- golgi 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G039390.1 | Barley | nucleus | 45.45 | 89.6 |
| HORVU3Hr1G057780.1 | Barley | nucleus | 80.94 | 89.03 |
| TraesCS4B01G235700.1 | Wheat | nucleus | 82.11 | 86.42 |
| TraesCS4D01G237100.3 | Wheat | nucleus | 79.18 | 82.82 |
| Os03t0231950-01 | Rice | nucleus | 61.29 | 68.75 |
| EER95218 | Sorghum | nucleus | 50.15 | 58.56 |
| Zm00001d028297_P001 | Maize | nucleus | 41.94 | 42.69 |
| TraesCS4A01G060300.1 | Wheat | cytosol | 10.85 | 7.4 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G060200.2 | EnsemblPlantsGene:TraesCS4A01G060200 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF151 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr4A:-:56501838..56503776
Molecular Weight (calculated)
37238.9 Da
IEP (calculated)
6.083
GRAVY (calculated)
-0.497
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MALFVPCINV FVGCCWQHGR DHVSDHCFSW QMYSPPCSAA GSNGERSFAA GANPLALLDH AMDFDEHVLF PMHNAGMQDG VQFYNPTAGG SGTELSRNMS
101: MEKGLKGGKR KGSGEGSSTM HSQEETGGMS QREVSMEGAG EKEGDAASNR EDYVHIRAKR GQATNNHSLA ERFRREKINE RMKHLQDLVP GCNKITGKAM
201: MLDEIINYVQ SLQRQVEFLS MKLSAVSPEL NCDLDLQDIL CPQDARSAFP GYGQRLGSVH PNSNMYRASQ PGLSRPELYG NGIIIPNPAN VHMARAAQQL
301: SAFPQRSIVW DEELGNVGPA AFPSDVVGAS SLENSESMKV E
101: MEKGLKGGKR KGSGEGSSTM HSQEETGGMS QREVSMEGAG EKEGDAASNR EDYVHIRAKR GQATNNHSLA ERFRREKINE RMKHLQDLVP GCNKITGKAM
201: MLDEIINYVQ SLQRQVEFLS MKLSAVSPEL NCDLDLQDIL CPQDARSAFP GYGQRLGSVH PNSNMYRASQ PGLSRPELYG NGIIIPNPAN VHMARAAQQL
301: SAFPQRSIVW DEELGNVGPA AFPSDVVGAS SLENSESMKV E
001: MSDKDEFAAK KKDLVNTPVD LYPPENPMLG PSPMMDSFRE TLWHDGGFNV HTDADTSFRD STGLFLQDTQ IPSGSKLDNG PLTDASKLVK ERSINNVSED
101: SQSSGGNGHD DAKCGQTSSK GFSSKKRKRI GKDCEEEEDK KQKDEQSPTS NANKTNSEKQ PSDSLKDGYI HMRARRGQAT NSHSLAERVR REKISERMKF
201: LQDLVPGCDK VTGKAVMLDE IINYVQSLQC QIEFLSMKLS AVNPVLDFNL ESLLAKDALQ SSAPTFPHNM SMLYPPVSYL SQTGFMQPNI SSMSLLSGGL
301: KRQETHGYES DHHNLVHMNH ETGTAPDHED TTADMKVEP
101: SQSSGGNGHD DAKCGQTSSK GFSSKKRKRI GKDCEEEEDK KQKDEQSPTS NANKTNSEKQ PSDSLKDGYI HMRARRGQAT NSHSLAERVR REKISERMKF
201: LQDLVPGCDK VTGKAVMLDE IINYVQSLQC QIEFLSMKLS AVNPVLDFNL ESLLAKDALQ SSAPTFPHNM SMLYPPVSYL SQTGFMQPNI SSMSLLSGGL
301: KRQETHGYES DHHNLVHMNH ETGTAPDHED TTADMKVEP
Arabidopsis Description
BHLH76Transcription factor bHLH76 [Source:UniProtKB/Swiss-Prot;Acc:Q9C670]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.