Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G057780.1 | Barley | nucleus | 94.8 | 52.9 |
| TraesCS4A01G060200.2 | Wheat | extracellular, mitochondrion, nucleus, plastid, vacuole | 89.6 | 45.45 |
| TraesCS4B01G235700.1 | Wheat | nucleus | 79.77 | 42.59 |
| TraesCS4D01G237100.3 | Wheat | nucleus | 79.77 | 42.33 |
| Os03t0231950-01 | Rice | nucleus | 67.63 | 38.49 |
| EER95218 | Sorghum | nucleus | 58.96 | 34.93 |
| Zm00001d028297_P001 | Maize | nucleus | 45.66 | 23.58 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G039390.1 | EnsemblPlantsGene:HORVU4Hr1G039390 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF151 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SUPFAM:SSF47459 | UniParc:UPI000B471B29 |
| UniProt:A0A287NUW7 | MapMan:15.5.32 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:301302166..301303260
Molecular Weight (calculated)
19035.3 Da
IEP (calculated)
9.809
GRAVY (calculated)
-1.061
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MYSPPCTAPG SNGERSFASG AANPLALLDH AMDFDEHVLF PMHNAGMQDG VQFYNHTAGG SGTELSRNMS MEKGLKGGKR KGSGEGSSTM HSQEETGAMS
101: RREASMERAG EKEGDAASNR EDYVHIRAKR GQATNNHSLA ERFRREKINE RMKHLQDLVP GCNKGKNQRK LKR
101: RREASMERAG EKEGDAASNR EDYVHIRAKR GQATNNHSLA ERFRREKINE RMKHLQDLVP GCNKGKNQRK LKR
001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQVSFSK TFFYHFSFLF LFNLKRS
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQVSFSK TFFYHFSFLF LFNLKRS
Arabidopsis Description
BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.