Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G235700.1 | Wheat | nucleus | 91.1 | 91.67 |
| HORVU3Hr1G057780.1 | Barley | nucleus | 77.3 | 81.29 |
| HORVU4Hr1G039390.1 | Barley | nucleus | 42.33 | 79.77 |
| TraesCS4A01G060200.2 | Wheat | extracellular, mitochondrion, nucleus, plastid, vacuole | 82.82 | 79.18 |
| Os03t0231950-01 | Rice | nucleus | 58.59 | 62.83 |
| EER95218 | Sorghum | nucleus | 46.93 | 52.4 |
| Zm00001d028297_P001 | Maize | nucleus | 42.33 | 41.19 |
| TraesCS4D01G237200.1 | Wheat | cytosol | 10.12 | 6.56 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G237100.3 | EnsemblPlantsGene:TraesCS4D01G237100 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF151 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 | SUPFAM:SSF47459 |
| TIGR:cd00083 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : | : | : |
Description
No Description!
Coordinates
chr4D:-:399180947..399182847
Molecular Weight (calculated)
35910.4 Da
IEP (calculated)
6.753
GRAVY (calculated)
-0.670
Length
326 amino acids
Sequence
(BLAST)
(BLAST)
001: MQHHTEIRYQ AQLHKMYSPP CSAAGSNGGQ SFAAGANPLA LLDHAMDFDE HVLFPMHNAG MQDGVQFYNP TAGGTELSRN MSMEKGLKGG KRKGSGEGSS
101: TMHSQQEETG AMSQREVSME RAGEKEGDAA SNREDYVHIR AKRGQATNNH SLAERFRREK INERMKHLQD LVPGCNKKIT GKAMMLDEII NYVQSLQRQV
201: EFLSMKLSAV SPELNCDLDL QDILCPQDAR STFPGYGQRL GNVHPNNNMY RASQPGLSRP ELYGNGIIIP NHPASVHMAR TAQQLSAFPH RSIVWDEELG
301: NVGPSAFPSD VVGASSLENS ESMKVE
101: TMHSQQEETG AMSQREVSME RAGEKEGDAA SNREDYVHIR AKRGQATNNH SLAERFRREK INERMKHLQD LVPGCNKKIT GKAMMLDEII NYVQSLQRQV
201: EFLSMKLSAV SPELNCDLDL QDILCPQDAR STFPGYGQRL GNVHPNNNMY RASQPGLSRP ELYGNGIIIP NHPASVHMAR TAQQLSAFPH RSIVWDEELG
301: NVGPSAFPSD VVGASSLENS ESMKVE
001: MGGESNEGGE MGFKHGDDES GGISRVGITS MPLYAKADPF FSSADWDPVV NAAAAGFSSS HYHPSMAMDN PGMSCFSHYQ PGSVSGFAAD MPASLLPFGD
101: CGGGQIGHFL GSDKKGERLI RAGESSHEDH HQVSDDAVLG ASPVGKRRLP EAESQWNKKA VEEFQEDPQR GNDQSQKKHK NDQSKETVNK ESSQSEEAPK
201: ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRILAK DLLQSRDRNT
301: PTLGLNPFAG FQGNIPNLSA TTNPQYNPLP QTTLESELQN LYQMGFVSNP STMSSFSPNG RLKPEL
101: CGGGQIGHFL GSDKKGERLI RAGESSHEDH HQVSDDAVLG ASPVGKRRLP EAESQWNKKA VEEFQEDPQR GNDQSQKKHK NDQSKETVNK ESSQSEEAPK
201: ENYIHMRARR GQATNSHSLA ERVRREKISE RMRLLQELVP GCNKITGKAV MLDEIINYVQ SLQQQVEFLS MKLATVNPEI NIDIDRILAK DLLQSRDRNT
301: PTLGLNPFAG FQGNIPNLSA TTNPQYNPLP QTTLESELQN LYQMGFVSNP STMSSFSPNG RLKPEL
Arabidopsis Description
BHLH74Transcription factor bHLH74 [Source:UniProtKB/Swiss-Prot;Acc:Q6NKN9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.