Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY00870 | Canola | nucleus | 98.77 | 98.77 |
| Bra015154.1-P | Field mustard | nucleus | 99.18 | 93.05 |
| CDX93055 | Canola | nucleus | 87.65 | 87.65 |
| CDY15058 | Canola | nucleus | 86.83 | 86.83 |
| AT2G04550.1 | Thale cress | nucleus | 82.3 | 77.82 |
| VIT_12s0059g01650.t01 | Wine grape | nucleus | 65.43 | 58.46 |
| PGSC0003DMT400036094 | Potato | nucleus | 65.43 | 58.46 |
| PGSC0003DMT400001770 | Potato | nucleus | 62.55 | 58.24 |
| Solyc12g005990.1.1 | Tomato | nucleus | 64.2 | 57.56 |
| Solyc07g049410.2.1 | Tomato | nucleus | 62.14 | 57.2 |
| TraesCS7B01G129500.1 | Wheat | cytosol | 61.73 | 56.6 |
| KRH73311 | Soybean | cytosol | 62.96 | 56.46 |
| TraesCS7D01G224700.1 | Wheat | cytosol | 61.32 | 56.23 |
| TraesCS7A01G223000.1 | Wheat | cytosol | 61.32 | 56.23 |
| KRH14828 | Soybean | cytosol | 62.55 | 56.09 |
| EER89672 | Sorghum | nucleus | 61.32 | 54.58 |
| Zm00001d037412_P001 | Maize | nucleus | 61.32 | 54.18 |
| Os06t0308100-01 | Rice | cytosol | 61.73 | 53.76 |
| GSMUA_Achr9P19040_001 | Banana | nucleus | 57.61 | 50.91 |
| HORVU7Hr1G045710.4 | Barley | cytosol | 61.32 | 50.0 |
| TraesCS6D01G263500.1 | Wheat | cytosol | 55.97 | 49.63 |
| TraesCS6A01G283000.1 | Wheat | cytosol | 55.56 | 49.27 |
| EES07355 | Sorghum | nucleus | 54.32 | 49.07 |
| Os02t0720300-01 | Rice | nucleus | 53.91 | 48.88 |
| GSMUA_Achr7P16900_001 | Banana | cytosol | 59.67 | 47.85 |
| Zm00001d017863_P001 | Maize | cytosol | 52.67 | 42.24 |
| HORVU6Hr1G071120.1 | Barley | plastid | 55.14 | 42.14 |
| CDX77494 | Canola | cytosol | 18.52 | 24.86 |
| CDX85116 | Canola | cytosol | 18.52 | 24.86 |
| CDY18107 | Canola | cytosol | 18.93 | 23.71 |
| CDY05232 | Canola | cytosol | 18.52 | 22.61 |
| CDY24718 | Canola | cytosol | 18.11 | 22.11 |
| CDY50461 | Canola | plastid | 18.93 | 20.26 |
| CDX76111 | Canola | cytosol | 20.99 | 7.18 |
| CDY02924 | Canola | cytosol | 20.16 | 6.86 |
| CDX88046 | Canola | nucleus | 18.11 | 5.05 |
| CDX80384 | Canola | nucleus | 18.11 | 5.02 |
Protein Annotations
| MapMan:18.4.23.2.2 | Gene3D:3.90.190.10 | GO:A0A078GRM5 | UniProt:A0A078GRM5 | EnsemblPlants:CDY27864 | ProteinID:CDY27864 |
| ProteinID:CDY27864.1 | InterPro:DUSP | InterPro:Dual-sp_phosphatase_cat-dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004725 |
| GO:GO:0006464 | GO:GO:0006470 | GO:GO:0008138 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016311 | GO:GO:0016787 | GO:GO:0016791 | GO:GO:0019538 | GO:GO:0035335 | EnsemblPlantsGene:GSBRNA2T00038710001 |
| InterPro:IPR000387 | InterPro:IPR020422 | InterPro:IPR029021 | PFAM:PF00782 | ScanProsite:PS00383 | PFscan:PS50054 |
| PFscan:PS50056 | PANTHER:PTHR10159 | PANTHER:PTHR10159:SF329 | InterPro:Prot-tyrosine_phosphatase-like | SMART:SM00195 | SUPFAM:SSF52799 |
| InterPro:TYR_PHOSPHATASE_DUAL_dom | InterPro:TYR_PHOSPHATASE_dom | InterPro:Tyr_Pase_AS | UniParc:UPI0004EF36B0 | SEG:seg | : |
Description
BnaA07g04540DBnaA07g04540D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRM5]
Coordinates
chrLK032211:-:44393..46308
Molecular Weight (calculated)
26990.1 Da
IEP (calculated)
7.717
GRAVY (calculated)
-0.411
Length
243 amino acids
Sequence
(BLAST)
(BLAST)
001: MRKRERENPC SLCGHYHKYE EGEVCGICGH RKPDSSDVAA PQVQLSAFPT EILPEFLYLG SYDNASRSEV LKTQGISRVL NTVPMCQNLY RNSFTYHCLS
101: DEKVLQFDDA IQFLDQCEKD KARVLVHCMS GKSRSPAVVV AYLMKRKGWR LAEKFYQQLE AFERTILGSR EGMMAAMNIN DPPTFGFGFP KVNNNSQAQV
201: PMFNNTSASS IFSSPASSVP QGFTFGAAPP KPTTGDDTIM GGS
101: DEKVLQFDDA IQFLDQCEKD KARVLVHCMS GKSRSPAVVV AYLMKRKGWR LAEKFYQQLE AFERTILGSR EGMMAAMNIN DPPTFGFGFP KVNNNSQAQV
201: PMFNNTSASS IFSSPASSVP QGFTFGAAPP KPTTGDDTIM GGS
001: MRKRERENPC SICGHYHKYE EGEVCGVCGH CMPVSSDTVA PQQVHVSAFP SEILPEFLYL GSYDNASRSE LLKTQGISRV LNTVPMCQNL YRNSFTYHGL
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS
Arabidopsis Description
IBR5Protein-tyrosine-phosphatase IBR5 [Source:UniProtKB/Swiss-Prot;Acc:Q84JU4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.