Factsheet for PGSC0003DMT400036094

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g005990.1.1	Tomato	nucleus	90.07	90.41
VIT_12s0059g01650.t01	Wine grape	nucleus	71.69	71.69
PGSC0003DMT400001770	Potato	nucleus	68.75	71.65
KRH73311	Soybean	cytosol	69.12	69.37
KRH14828	Soybean	cytosol	68.38	68.63
CDY15058	Canola	nucleus	60.66	67.9
CDX93055	Canola	nucleus	60.29	67.49
AT2G04550.1	Thale cress	nucleus	62.87	66.54
Bra013201.1-P	Field mustard	nucleus	49.63	66.18
CDY27864	Canola	nucleus	58.46	65.43
CDY00870	Canola	nucleus	58.09	65.02
Bra015154.1-P	Field mustard	nucleus	61.76	64.86
TraesCS7D01G224700.1	Wheat	cytosol	59.19	60.75
TraesCS7B01G129500.1	Wheat	cytosol	59.19	60.75
TraesCS7A01G223000.1	Wheat	cytosol	58.82	60.38
EER89672	Sorghum	nucleus	59.93	59.71
Zm00001d037412_P001	Maize	nucleus	60.29	59.64
Os06t0308100-01	Rice	cytosol	60.29	58.78
TraesCS6D01G263500.1	Wheat	cytosol	56.99	56.57
GSMUA_Achr9P19040_001	Banana	nucleus	56.99	56.36
TraesCS6A01G283000.1	Wheat	cytosol	56.62	56.2
EES07355	Sorghum	nucleus	55.15	55.76
Os02t0720300-01	Rice	nucleus	53.68	54.48
HORVU7Hr1G045710.4	Barley	cytosol	59.56	54.36
GSMUA_Achr7P16900_001	Banana	cytosol	59.19	53.14
HORVU6Hr1G071120.1	Barley	plastid	56.25	48.11
Zm00001d017863_P001	Maize	cytosol	53.31	47.85
PGSC0003DMT400030617	Potato	nucleus	21.69	6.75
PGSC0003DMT400060202	Potato	cytosol	21.69	6.67
PGSC0003DMT400036964	Potato	cytosol	16.91	5.02
PGSC0003DMT400036963	Potato	cytosol	0.74	0.54

Protein Annotations

EntrezGene:102582090	MapMan:18.4.23.2.2	Gene3D:3.90.190.10	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004725	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538
GO:GO:0035335	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021	UniProt:M1B3A1	PFAM:PF00782
EnsemblPlantsGene:PGSC0003DMG400013901	PGSC:PGSC0003DMG400013901	EnsemblPlants:PGSC0003DMT400036094	ScanProsite:PS00383	PFscan:PS50054	PFscan:PS50056
PANTHER:PTHR10159	PANTHER:PTHR10159:SF329	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799	InterPro:TYR_PHOSPHATASE_DUAL_dom
InterPro:TYR_PHOSPHATASE_dom	InterPro:Tyr_Pase_AS	UniParc:UPI0002959A73	RefSeq:XP_006352024.1	SEG:seg	:

Description

Dual specificity protein phosphatase [Source:PGSC_GENE;Acc:PGSC0003DMG400013901]

Coordinates

chr12:-:6395463..6401603

Molecular Weight (calculated)

30200.6 Da

IEP (calculated)

6.154

GRAVY (calculated)

-0.406

Length

272 amino acids

Sequence
(BLAST)

001: MRKRERENPC GVCGHYHKYE EGEVCGICGH RMPDVSEKGS SIHVSAFPSE ILPEFLFLGS YDNASRAELL KTVGISRILN TVPACQNLYK NSFTYHCLQD
101: EQNLAFDDAI QFLEQCEKDR ARVLVHCMLG KNRSAAIVIA YLMKSKGWNL AQSLQWAKER RPSVDLTQEV YQQLQEYEQK IFVSLQNQPS PIMPAFSSPV
201: ASFNFGFPKG SDQIPVPAFN NSSAPSLFSP PAFEVPPQGF TFGAANNQHT ASESPLNANQ NPNGSDIAMD GS

Best Arabidopsis Sequence Match ( AT2G04550.1 )
(BLAST)

001: MRKRERENPC SICGHYHKYE EGEVCGVCGH CMPVSSDTVA PQQVHVSAFP SEILPEFLYL GSYDNASRSE LLKTQGISRV LNTVPMCQNL YRNSFTYHGL
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS

Arabidopsis Description

IBR5Protein-tyrosine-phosphatase IBR5 [Source:UniProtKB/Swiss-Prot;Acc:Q84JU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.