Factsheet for VIT_12s0059g01650.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04550.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73311	Soybean	cytosol	76.1	76.38
KRH14828	Soybean	cytosol	75.37	75.65
PGSC0003DMT400036094	Potato	nucleus	71.69	71.69
Solyc12g005990.1.1	Tomato	nucleus	70.59	70.85
PGSC0003DMT400001770	Potato	nucleus	66.18	68.97
Solyc07g049410.2.1	Tomato	nucleus	66.91	68.94
AT2G04550.1	Thale cress	nucleus	62.87	66.54
CDY00870	Canola	nucleus	58.46	65.43
CDY27864	Canola	nucleus	58.46	65.43
CDX93055	Canola	nucleus	58.09	65.02
GSMUA_Achr9P19040_001	Banana	nucleus	65.07	64.36
Bra015154.1-P	Field mustard	nucleus	61.03	64.09
CDY15058	Canola	nucleus	56.99	63.79
Zm00001d037412_P001	Maize	nucleus	63.6	62.91
EER89672	Sorghum	nucleus	62.13	61.9
Bra013201.1-P	Field mustard	nucleus	46.32	61.76
TraesCS7D01G224700.1	Wheat	cytosol	59.56	61.13
TraesCS7B01G129500.1	Wheat	cytosol	59.56	61.13
TraesCS7A01G223000.1	Wheat	cytosol	59.19	60.75
Os06t0308100-01	Rice	cytosol	60.29	58.78
GSMUA_Achr7P16900_001	Banana	cytosol	65.07	58.42
TraesCS6D01G263500.1	Wheat	cytosol	56.62	56.2
EES07355	Sorghum	nucleus	55.51	56.13
TraesCS6A01G283000.1	Wheat	cytosol	56.25	55.84
Os02t0720300-01	Rice	nucleus	54.41	55.22
HORVU7Hr1G045710.4	Barley	cytosol	59.93	54.7
Zm00001d017863_P001	Maize	cytosol	55.15	49.51
HORVU6Hr1G071120.1	Barley	plastid	55.88	47.8
VIT_05s0020g02710.t01	Wine grape	cytosol	17.65	27.75
VIT_07s0185g00130.t01	Wine grape	cytosol	22.79	8.08
VIT_01s0137g00600.t01	Wine grape	cytosol	24.63	8.0
VIT_13s0019g00070.t01	Wine grape	cytosol	22.43	6.78
VIT_17s0000g00360.t01	Wine grape	cytosol	16.91	4.94

Protein Annotations

EntrezGene:100249965	wikigene:100249965	MapMan:18.4.23.2.2	Gene3D:3.90.190.10	ProteinID:CBI28889	ProteinID:CBI28889.3
UniProt:D7TEG6	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	EMBL:FN595765	GO:GO:0003674	GO:GO:0003824
GO:GO:0004725	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006470	GO:GO:0007154	GO:GO:0007165	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	GO:GO:0035335
GO:GO:0043407	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021	EntrezGene:LOC100249965	wikigene:LOC100249965
PFAM:PF00782	ScanProsite:PS00383	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF329
InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799	TIGR:TC64842	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom
InterPro:Tyr_Pase_AS	UniParc:UPI00015CAFDA	ArrayExpress:VIT_12s0059g01650	EnsemblPlantsGene:VIT_12s0059g01650	EnsemblPlants:VIT_12s0059g01650.t01	unigene:Vvi.530
RefSeq:XP_002277180	RefSeq:XP_002277180.1	:	:	:	:

Description

No Description!

Coordinates

chr12:-:6548225..6561987

Molecular Weight (calculated)

30291.8 Da

IEP (calculated)

6.761

GRAVY (calculated)

-0.417

Length

272 amino acids

Sequence
(BLAST)

001: MRKRERENPC GVCGHYHKYE EGEVCGVCGH RIPASSEKTS IQVSAFPSEI LPEFLYLGSY DNASRSELLK TQGISRVLNT VPACQNLYKN SFTYYCLPDD
101: KSLPFDDAIQ FLEQCEKDKA RVLVHCMSGK NRSPAIVIAY LMKCKGWRFA QSYQWVKERR PSVELSQAVH EQLQEYERSI FGSMESISPT MPIFQPSGAA
201: SFTFGFPKAN DPLPAPAFNT IGAASIFARP PADVPPHEFK FGAGQTDKNI VESPFIANPS NPNSSDIPMD SS

Best Arabidopsis Sequence Match ( AT2G04550.1 )
(BLAST)

001: MRKRERENPC SICGHYHKYE EGEVCGVCGH CMPVSSDTVA PQQVHVSAFP SEILPEFLYL GSYDNASRSE LLKTQGISRV LNTVPMCQNL YRNSFTYHGL
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS

Arabidopsis Description

IBR5Protein-tyrosine-phosphatase IBR5 [Source:UniProtKB/Swiss-Prot;Acc:Q84JU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.