CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d037412_P001	Maize	nucleus	95.24	94.55
TraesCS7D01G224700.1	Wheat	cytosol	82.78	85.28
TraesCS7A01G223000.1	Wheat	cytosol	82.78	85.28
TraesCS7B01G129500.1	Wheat	cytosol	82.42	84.91
Os06t0308100-01	Rice	cytosol	83.88	82.08
HORVU7Hr1G045710.4	Barley	cytosol	83.52	76.51
EES07355	Sorghum	nucleus	68.13	69.14
Solyc07g049410.2.1	Tomato	nucleus	60.44	62.5
VIT_12s0059g01650.t01	Wine grape	nucleus	61.9	62.13
CDX93055	Canola	nucleus	54.95	61.73
CDY00870	Canola	nucleus	54.95	61.73
AT2G04550.1	Thale cress	nucleus	57.88	61.48
CDY27864	Canola	nucleus	54.58	61.32
CDY15058	Canola	nucleus	54.58	61.32
PGSC0003DMT400001770	Potato	nucleus	58.24	60.92
Bra015154.1-P	Field mustard	nucleus	57.51	60.62
GSMUA_Achr9P19040_001	Banana	nucleus	60.81	60.36
Bra013201.1-P	Field mustard	nucleus	45.05	60.29
PGSC0003DMT400036094	Potato	nucleus	59.71	59.93
KRH14828	Soybean	cytosol	58.97	59.41
KRH73311	Soybean	cytosol	58.61	59.04
Solyc12g005990.1.1	Tomato	nucleus	58.61	59.04
GSMUA_Achr7P16900_001	Banana	cytosol	62.27	56.11
EER93666	Sorghum	cytosol	15.02	21.47
OQU77254	Sorghum	cytosol	19.41	6.95
EES00724	Sorghum	cytosol	18.68	5.88
EES00653	Sorghum	cytosol	17.58	5.17

Protein Annotations

MapMan:18.4.23.2.2	Gene3D:3.90.190.10	EntrezGene:8072850	UniProt:C5Z1K6	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom
EnsemblPlants:EER89672	ProteinID:EER89672	ProteinID:EER89672.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004725
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006470
GO:GO:0007154	GO:GO:0007165	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	GO:GO:0035335	GO:GO:0043407
InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021	PFAM:PF00782	ScanProsite:PS00383	PFscan:PS50054
PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF329	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	EnsemblPlantsGene:SORBI_3010G129600
SUPFAM:SSF52799	unigene:Sbi.3653	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	InterPro:Tyr_Pase_AS	UniParc:UPI0001A89B2D
RefSeq:XP_002438305.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:17510494..17516453

Molecular Weight (calculated)

30496.9 Da

IEP (calculated)

7.062

GRAVY (calculated)

-0.466

Length

273 amino acids

Sequence
(BLAST)

001: MRKRERENPC GICGHYHKYE EGEVCGVCGH RPPAASPAGA RQQDSAFPSE ILKEFLFLGS YDNASRSELL KTIGVSHILN TVPLCQNLYR NSFTYHCLQE
101: DKTLQFDDAN QFLEQCEREK ARVLVHCMSG KSRSAAFVVA FLMKSRGWRL TQSFQWVKER RPQVQLSDAA QQQLIDYEMK LFGSNNVSIP AQPFAPVDSF
201: PSLGFGFPKP AGDIQVPTFN QQAPASIFER VTPNSFPSNF TFGAERTSEA KLPDSNNFGV INSSGSDSMM DSS

Best Arabidopsis Sequence Match ( AT2G04550.1 )
(BLAST)

001: MRKRERENPC SICGHYHKYE EGEVCGVCGH CMPVSSDTVA PQQVHVSAFP SEILPEFLYL GSYDNASRSE LLKTQGISRV LNTVPMCQNL YRNSFTYHGL
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS

Arabidopsis Description

IBR5Protein-tyrosine-phosphatase IBR5 [Source:UniProtKB/Swiss-Prot;Acc:Q84JU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.