Factsheet for Solyc12g005990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036094	Potato	nucleus	90.41	90.07
VIT_12s0059g01650.t01	Wine grape	nucleus	70.85	70.59
Solyc07g049410.2.1	Tomato	nucleus	67.9	69.7
KRH73311	Soybean	cytosol	67.53	67.53
KRH14828	Soybean	cytosol	66.42	66.42
CDY15058	Canola	nucleus	59.41	66.26
CDX93055	Canola	nucleus	59.04	65.84
AT2G04550.1	Thale cress	nucleus	62.36	65.76
Bra013201.1-P	Field mustard	nucleus	48.34	64.22
CDY27864	Canola	nucleus	57.56	64.2
CDY00870	Canola	nucleus	57.2	63.79
Bra015154.1-P	Field mustard	nucleus	60.52	63.32
TraesCS7D01G224700.1	Wheat	cytosol	57.93	59.25
TraesCS7B01G129500.1	Wheat	cytosol	57.93	59.25
TraesCS7A01G223000.1	Wheat	cytosol	57.56	58.87
EER89672	Sorghum	nucleus	59.04	58.61
Zm00001d037412_P001	Maize	nucleus	59.41	58.55
Os06t0308100-01	Rice	cytosol	58.67	56.99
GSMUA_Achr9P19040_001	Banana	nucleus	57.56	56.73
TraesCS6D01G263500.1	Wheat	cytosol	55.35	54.74
TraesCS6A01G283000.1	Wheat	cytosol	54.98	54.38
GSMUA_Achr7P16900_001	Banana	cytosol	60.52	54.13
EES07355	Sorghum	nucleus	53.51	53.9
Os02t0720300-01	Rice	nucleus	52.77	53.36
HORVU7Hr1G045710.4	Barley	cytosol	58.3	53.02
Zm00001d017863_P001	Maize	cytosol	52.4	46.86
HORVU6Hr1G071120.1	Barley	plastid	54.61	46.54
Solyc01g080040.2.1	Tomato	cytosol	17.71	26.82
Solyc05g013750.2.1	Tomato	nucleus	23.25	7.22
Solyc05g054700.2.1	Tomato	cytosol	23.25	7.12
Solyc03g118350.2.1	Tomato	cytosol	17.71	5.19

Protein Annotations

MapMan:18.4.23.2.2	Gene3D:3.90.190.10	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824
GO:GO:0004725	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006470	GO:GO:0007154	GO:GO:0007165	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	GO:GO:0035335
GO:GO:0043407	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021	UniProt:K4DBD7	PFAM:PF00782
ScanProsite:PS00383	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF329	InterPro:Prot-tyrosine_phosphatase-like
SMART:SM00195	SUPFAM:SSF52799	EnsemblPlantsGene:Solyc12g005990.1	EnsemblPlants:Solyc12g005990.1.1	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom
InterPro:Tyr_Pase_AS	UniParc:UPI000276A627	:	:	:	:

Description

No Description!

Coordinates

chr12:+:608257..613415

Molecular Weight (calculated)

30252.9 Da

IEP (calculated)

6.591

GRAVY (calculated)

-0.393

Length

271 amino acids

Sequence
(BLAST)

001: MRKRERENPC GVCGHYHKYE EGEVCGICGH RMPDVSEKGS SVHVSAFPSE ILPEFLFLGS YDNASRAELL KTIGISRILN IVPACQNLYK NSFTYHCLQD
101: EQNLAFDDAI QFLEQCEKDR ARVLVHCMLG KNRSAAIVIA YLMKSKGWNL AQSLQWTKER RPSVDLNQEV YQQLQDYEQK IFMSLQSKPS PVMLAFSSPM
201: TSFNFGFPKT GDHIPAPAFN NTSAPSVFSP PAFEVPPQGF TFGASHNQHA GSETPLNANP NPNGSDIAMD L

Best Arabidopsis Sequence Match ( AT2G04550.1 )
(BLAST)

001: MRKRERENPC SICGHYHKYE EGEVCGVCGH CMPVSSDTVA PQQVHVSAFP SEILPEFLYL GSYDNASRSE LLKTQGISRV LNTVPMCQNL YRNSFTYHGL
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS

Arabidopsis Description

IBR5Protein-tyrosine-phosphatase IBR5 [Source:UniProtKB/Swiss-Prot;Acc:Q84JU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.