CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04550.1	CDX68112	AT1G75950.1	12795696
AT2G04550.1	CDX73212	AT1G75950.1	12795696
AT2G04550.1	CDX80590	AT1G75950.1	12795696
AT2G04550.1	CDX85931	AT1G75950.1	12795696
AT2G04550.1	CDX87650	AT1G75950.1	12795696
AT2G04550.1	CDY13521	AT1G75950.1	12795696
AT2G04550.1	CDY39073	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27864	Canola	nucleus	98.77	98.77
Bra015154.1-P	Field mustard	nucleus	98.77	92.66
CDX93055	Canola	nucleus	88.07	88.07
CDY15058	Canola	nucleus	87.24	87.24
AT2G04550.1	Thale cress	nucleus	82.72	78.21
VIT_12s0059g01650.t01	Wine grape	nucleus	65.43	58.46
PGSC0003DMT400001770	Potato	nucleus	62.55	58.24
PGSC0003DMT400036094	Potato	nucleus	65.02	58.09
Solyc07g049410.2.1	Tomato	nucleus	62.55	57.58
Solyc12g005990.1.1	Tomato	nucleus	63.79	57.2
TraesCS7B01G129500.1	Wheat	cytosol	62.14	56.98
KRH73311	Soybean	cytosol	63.37	56.83
TraesCS7A01G223000.1	Wheat	cytosol	61.73	56.6
TraesCS7D01G224700.1	Wheat	cytosol	61.73	56.6
KRH14828	Soybean	cytosol	62.96	56.46
EER89672	Sorghum	nucleus	61.73	54.95
Zm00001d037412_P001	Maize	nucleus	61.73	54.55
Os06t0308100-01	Rice	cytosol	62.14	54.12
HORVU7Hr1G045710.4	Barley	cytosol	62.14	50.67
GSMUA_Achr9P19040_001	Banana	nucleus	57.2	50.55
Os02t0720300-01	Rice	nucleus	54.73	49.63
TraesCS6D01G263500.1	Wheat	cytosol	55.56	49.27
TraesCS6A01G283000.1	Wheat	cytosol	55.14	48.91
EES07355	Sorghum	nucleus	53.91	48.7
GSMUA_Achr7P16900_001	Banana	cytosol	60.08	48.18
Zm00001d017863_P001	Maize	cytosol	53.09	42.57
HORVU6Hr1G071120.1	Barley	plastid	54.73	41.82
CDX77494	Canola	cytosol	18.52	24.86
CDX85116	Canola	cytosol	18.52	24.86
CDY18107	Canola	cytosol	18.93	23.71
CDY05232	Canola	cytosol	18.52	22.61
CDY24718	Canola	cytosol	18.11	22.11
CDY50461	Canola	plastid	18.93	20.26
CDX76111	Canola	cytosol	20.58	7.04
CDY02924	Canola	cytosol	19.75	6.72
CDX88046	Canola	nucleus	18.11	5.05
CDX80384	Canola	nucleus	18.11	5.02

Protein Annotations

MapMan:18.4.23.2.2	Gene3D:3.90.190.10	GO:A0A078EFK7	EnsemblPlants:CDY00870	ProteinID:CDY00870	ProteinID:CDY00870.1
InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004725	GO:GO:0006464
GO:GO:0006470	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016311
GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00110827001	InterPro:IPR000387	InterPro:IPR020422
InterPro:IPR029021	PFAM:PF00782	ScanProsite:PS00383	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10159
PANTHER:PTHR10159:SF329	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom
InterPro:Tyr_Pase_AS	UniParc:UPI0004EF1FA9	SEG:seg	:	:	:

Description

BnaCnng00700D

Coordinates

chrLK031922:+:899220..901255

Molecular Weight (calculated)

26956.0 Da

IEP (calculated)

7.717

GRAVY (calculated)

-0.389

Length

243 amino acids

Sequence
(BLAST)

001: MRKRERENPC SLCGHYHKYE EGEVCGICGH RKPDSSDVAA PQVQLSAFPT EILPEFLYLG SYDNASRSEV LKTQGISRVL NTVPMCQNLY RNSFTYHCLS
101: DEKVLQFDDA IQFLDQCEKD KARVLVHCMS GKSRSPAVVV AYLMKRKGWR LAEKFYQQLE AFERTILGSR EGMMAAMNIN DPPTFGFGFP KVNNNSQAQV
201: PVFNNTSAAS IFSSPASSIP QGFTFGAAPP KPTTGDDTIM GGS

Best Arabidopsis Sequence Match ( AT2G04550.1 )
(BLAST)

001: MRKRERENPC SICGHYHKYE EGEVCGVCGH CMPVSSDTVA PQQVHVSAFP SEILPEFLYL GSYDNASRSE LLKTQGISRV LNTVPMCQNL YRNSFTYHGL
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS

Arabidopsis Description

IBR5Protein-tyrosine-phosphatase IBR5 [Source:UniProtKB/Swiss-Prot;Acc:Q84JU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.