CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017863_P001	Maize	cytosol	92.57	82.18
Os02t0720300-01	Rice	nucleus	71.0	71.27
TraesCS6D01G263500.1	Wheat	cytosol	71.0	69.71
TraesCS6A01G283000.1	Wheat	cytosol	71.0	69.71
EER89672	Sorghum	nucleus	69.14	68.13
HORVU6Hr1G071120.1	Barley	plastid	72.12	61.01
GSMUA_Achr9P19040_001	Banana	nucleus	59.11	57.82
Solyc07g049410.2.1	Tomato	nucleus	55.76	56.82
KRH73311	Soybean	cytosol	56.88	56.46
KRH14828	Soybean	cytosol	56.13	55.72
PGSC0003DMT400001770	Potato	nucleus	53.9	55.56
VIT_12s0059g01650.t01	Wine grape	nucleus	56.13	55.51
PGSC0003DMT400036094	Potato	nucleus	55.76	55.15
AT2G04550.1	Thale cress	nucleus	52.42	54.86
Bra015154.1-P	Field mustard	nucleus	52.42	54.44
CDY27864	Canola	nucleus	49.07	54.32
CDX93055	Canola	nucleus	49.07	54.32
CDY15058	Canola	nucleus	48.7	53.91
CDY00870	Canola	nucleus	48.7	53.91
Solyc12g005990.1.1	Tomato	nucleus	53.9	53.51
Bra013201.1-P	Field mustard	nucleus	39.78	52.45
GSMUA_Achr7P16900_001	Banana	cytosol	58.36	51.82
EER93666	Sorghum	cytosol	14.87	20.94
OQU77254	Sorghum	cytosol	18.22	6.42
EES00724	Sorghum	cytosol	16.73	5.19
EES00653	Sorghum	cytosol	17.84	5.17

Protein Annotations

MapMan:18.4.23.2.2	Gene3D:3.90.190.10	EntrezGene:8071772	UniProt:C5XZU5	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom
EnsemblPlants:EES07355	ProteinID:EES07355	ProteinID:EES07355.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004725
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006470
GO:GO:0007154	GO:GO:0007165	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016311	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	GO:GO:0035335	GO:GO:0043407
InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021	PFAM:PF00782	ScanProsite:PS00383	PFscan:PS50054
PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF331	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	EnsemblPlantsGene:SORBI_3004G258600
SUPFAM:SSF52799	unigene:Sbi.15164	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	InterPro:Tyr_Pase_AS	UniParc:UPI0001A85C96
RefSeq:XP_002454379.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:60410968..60414390

Molecular Weight (calculated)

30377.6 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.668

Length

269 amino acids

Sequence
(BLAST)

001: MRKRERENPC GICGHYHKYE EGEVCGVCGH RLKPSDGEGA PSSHESAFPT EVLKEFLFLG SYDNASRSEV LRTLSISHIL NTVPDCHNLY KNSFTYHSLQ
101: RDRPLDFDEA NQYLEKCERD KSRVLVHCMT GKNRSAAIVA AFLMKSRGWR LAQSFQWVKD RRPQVQLTDA SQNELLEYEL KLFGPSAQPL VPTESFASLG
201: FGYEKPAGDI QAPMFNQMTM PSIFERVNPN DHPTNFTFGA ERIAEVNPHD NNSDGGVNPT KTENLMDGS

Best Arabidopsis Sequence Match ( AT2G04550.1 )
(BLAST)

001: MRKRERENPC SICGHYHKYE EGEVCGVCGH CMPVSSDTVA PQQVHVSAFP SEILPEFLYL GSYDNASRSE LLKTQGISRV LNTVPMCQNL YRNSFTYHGL
101: DNEKVLQFDD AIKFLDQCEK DKARVLVHCM SGKSRSPAVV VAYLMKRKGW RLAESHQWVK QRRPSTDISP EFYQQLQEFE QGIFGSEMMS AMNINDAPTF
201: GFGFPKIDNQ AQAPVFNNAP TSSIFSSPAS SIPPQEFTFG ATPPKPTTGG DIAMDGS

Arabidopsis Description

IBR5Protein-tyrosine-phosphatase IBR5 [Source:UniProtKB/Swiss-Prot;Acc:Q84JU4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.