CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY24091
CDY25849
CDY45117
CDY60212

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23720.1	CDY24091	AT1G53510.1	19392697
AT5G23720.1	CDY25849	AT1G53510.1	19392697
AT5G23720.1	CDY45117	AT1G53510.1	19392697
AT5G23720.1	CDY60212	AT1G53510.1	19392697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88046	Canola	nucleus	96.92	97.48
Bra009705.1-P	Field mustard	nucleus	98.29	92.39
AT5G23720.1	Thale cress	nucleus	89.74	84.71
VIT_17s0000g00360.t01	Wine grape	cytosol	68.19	64.23
PGSC0003DMT400036964	Potato	cytosol	66.48	63.65
Solyc03g118350.2.1	Tomato	cytosol	66.36	62.92
KRH41072	Soybean	cytosol	64.42	61.41
KRH59756	Soybean	cytosol	63.85	60.74
KRH63849	Soybean	cytosol	62.83	59.89
GSMUA_Achr9P31030_001	Banana	cytosol	54.85	54.66
GSMUA_Achr9P16510_001	Banana	cytosol	57.13	54.58
GSMUA_Achr3P08210_001	Banana	nucleus	55.64	53.22
GSMUA_Achr11P...	Banana	cytosol	52.34	52.64
Zm00001d009183_P008	Maize	cytosol	51.77	52.42
TraesCS7B01G450800.1	Wheat	cytosol	50.97	52.28
EES00724	Sorghum	cytosol	51.31	51.9
TraesCS7A01G533600.2	Wheat	cytosol	50.4	51.7
KRH54116	Soybean	cytosol	61.23	51.63
TraesCS7D01G521000.1	Wheat	cytosol	50.29	51.58
Os01t0347000-01	Rice	plasma membrane	51.2	51.55
HORVU1Hr1G065070.6	Barley	cytosol	53.48	51.48
Os01t0311500-01	Rice	nucleus	54.28	51.4
HORVU7Hr1G117420.1	Barley	vacuole	50.06	51.34
TraesCS1A01G265000.2	Wheat	cytosol	53.93	51.08
EES00653	Sorghum	cytosol	53.93	50.97
TraesCS1D01G265200.5	Wheat	cytosol	53.82	50.92
TraesCS1B01G275700.3	Wheat	cytosol	53.59	50.65
PGSC0003DMT400036963	Potato	cytosol	20.41	47.99
Zm00001d040641_P002	Maize	cytosol	53.48	45.8
CDX85116	Canola	cytosol	6.73	32.6
CDX77494	Canola	cytosol	6.73	32.6
CDY18107	Canola	cytosol	6.61	29.9
CDY50461	Canola	plastid	6.73	25.99
CDY24718	Canola	cytosol	5.36	23.62
CDY05232	Canola	cytosol	5.25	23.12
CDY15058	Canola	nucleus	5.47	19.75
CDX93055	Canola	nucleus	5.25	18.93
CDY00870	Canola	nucleus	5.02	18.11
CDY27864	Canola	nucleus	5.02	18.11
CDY02924	Canola	cytosol	9.58	11.76
CDX76111	Canola	cytosol	9.46	11.69

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:1.10.1070.11	MapMan:18.4.23.2.2	Gene3D:3.90.190.10	GO:A0A078CWH2
InterPro:Actin-fragmin_kin_cat_dom	EnsemblPlants:CDX80384	ProteinID:CDX80384	ProteinID:CDX80384.1	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004725	GO:GO:0006464	GO:GO:0006470
GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016043	GO:GO:0016301	GO:GO:0016311	GO:GO:0016740	GO:GO:0016787	GO:GO:0016791
GO:GO:0019538	GO:GO:0043622	EnsemblPlantsGene:GSBRNA2T00133448001	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021
InterPro:IPR036940	InterPro:Kinase-like_dom_sf	PFAM:PF00782	PFAM:PF09192	InterPro:PHS1	InterPro:PI3/4_kinase_cat_sf
ScanProsite:PS00383	PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF346	InterPro:Prot-tyrosine_phosphatase-like
SMART:SM00195	SUPFAM:SSF52799	SUPFAM:SSF56112	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	InterPro:Tyr_Pase_AS
UniParc:UPI0004EDD7B2	SEG:seg	:	:	:	:

Description

BnaC07g30600D

Coordinates

chrLK031821:+:155122..159565

Molecular Weight (calculated)

98201.9 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.488

Length

877 amino acids

Sequence
(BLAST)

001: MAEAEKKRDQ TFPQEKDEEK DLDLGHCDEH ESPLPLTVTS RVLYMLGDIA AGPAYRFTQW LDLVRKRSAT YGSSGFPHRL HRIDDMVSSA GERNADPKSP
101: PSKETSEISL WERLGKASIV DIDSISFSWS MLSSLHHTEH SSSTDHSEED QSKPLEVTVN SGGVVFFALF SHPSSEDASR KEEAAAVIKF ASSRMATQSE
201: RLGYEFAKWL GVQIPQARVI HSCNPEWTLI KEATEKAQAK ANSEGDEVGE VTCSELLEAL ELSRCLLLMS YVHGCPLLES MSSFETEEKA ERAASALGRI
301: LLLDLVIRNE DRLPCRQLRW RGNPANLLLT DRIMSSTKPL ECSFEEAFDS AIKRASSVDS RSRLSVSDHR LFMSPMSDTS VAPEFHIVTI DSGVPRRPPA
401: GKRASDQEIY PRLVELLINS SQYSSNLLYE ITEGGLGHPQ AKEREETPAA VTPVVREFRN GFRAGLRDLH EFHIFLVTLH QKLDGLLRAF FSMMDKTMCA
501: DFDRDDFAVP ESPSQGFGHE VNHHYPSPSK ERVPSDNSFD HRDATSPKSR ESWHGRYSRG GESLSSQRLA AKLRDFHKFA KIDAESNKEL DQWNETLRNE
601: VMKLCQENGF NTGFFEGSDN NSCIDAYELK VRLEHILERI SLITKAANTE KPSMIQDNIF IGGGLAARSV YTLQHLGITH ILCLCANEIG QSDTQYPDLF
701: KYKNFSITDD EDSKIEGIFQ EALDFINHGE ETGGKILVHC FEGRSRSATV VLAYLMLRKN LTLLEAWSKL RKVHRRAQPN DGFARILVNI DKKCHGKVSM
801: EWRQRKPTMK VCPVCGKNAG LSSSSLKLHL QKSHKKLSSG SVDSAMNMEI QKALEALQLS SGRGSSVSSS SFQSLTG

Best Arabidopsis Sequence Match ( AT5G23720.1 )
(BLAST)

001: MAEPEKKRDQ PFSQEKDEEK DLYLVHDEHE SPLPLTVTSR VLYMLGDIAS GPAYRFTQWL DLVRKRSATY GSSGFPHRLH RIDDMVTSAG ERNTDPKSPP
101: SRQSSEISLW ERLGKASTVD IDSSCFSWNM LSSLHHTEHS SSTDHSEEDQ SKPLEVTVNS GGVVFFALFN SSSSEDASRK EEAAVIKFAS SRMATQSERL
201: GYEFSKWLGV QIPQARVIHS CNPEWTLIKE ATEKAQAKAT SEGDEVGEMT CSELLEALEL SRCLLLMSYV HGCPMLESMS SFETEEKAER AAAALGRILV
301: LDLVIRNEDR LPCRQLRWRG NPANLLLTDR IVSSAKHHEC SFDEAFDSAI KRYHPKDYRS IQRERRASSV DSRSRLSISD QMLVSQASDF SDITESPRSY
401: DTGLMSPMSD RSVAADFHLV AIDSGVPRRP PAGKRASDQE IYPRLVELLL NSSQYSSNLL HEITEGSLGY PQAEDGEETS NVRSVVTPVV REFRNGFRAG
501: LRDLQEFHIF LVTLHQKLDV LLRAFFSMMD KTMCADFDRE DFAVPESPSH THGHEVNHYP SPSKDRVPSD NSSDHSESDM QKSVPRTPNS ENKEDGSSPK
601: SRESWHGRSG KGGESLSSQR LAAKLRDFHK FAKVDAESNK ELDQWNETLR NEVMKLCQEN GFNTGFFEGS DNNSCTDAYE LKVRLEHILE RISLISKAAN
701: TEKPSMIQEN LFIGGGLAAR SIYTLQHLGI THVLCLCANE IGQSDTQYPD LFEYQNFSIT DDEDSNIESI FQEALDFIKH GEETGGKILV HCFEGRSRSA
801: TVVLAYLMLQ KKLTLLEAWS KLRKVHRRAQ PNDGFARILI NLDKKCHGKV SMEWRQRKPT MKVCPVCGKN AGLSSSSLKL HLQKSHRKLS SGSVDSAMNM
901: EIQKALEALK LSTGRGSSAS SNSFQSHPG

Arabidopsis Description

PHS1Dual specificity protein phosphatase PHS1 [Source:UniProtKB/Swiss-Prot;Acc:Q75QN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.