Factsheet for VIT_17s0000g00360.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_19s0014g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23720.1	VIT_19s0014g00220.t01	AT1G53510.1	19392697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400036964	Potato	cytosol	73.04	74.24
Solyc03g118350.2.1	Tomato	cytosol	73.58	74.05
KRH41072	Soybean	cytosol	72.72	73.59
KRH59756	Soybean	cytosol	72.29	72.99
KRH63849	Soybean	cytosol	70.25	71.09
CDX80384	Canola	nucleus	64.23	68.19
CDX88046	Canola	nucleus	63.59	67.89
Bra009705.1-P	Field mustard	nucleus	67.13	66.99
AT5G23720.1	Thale cress	nucleus	66.7	66.85
PGSC0003DMT400036963	Potato	cytosol	26.42	65.95
GSMUA_Achr9P16510_001	Banana	cytosol	62.3	63.18
GSMUA_Achr9P31030_001	Banana	cytosol	59.51	62.95
GSMUA_Achr3P08210_001	Banana	nucleus	61.33	62.27
GSMUA_Achr11P...	Banana	cytosol	57.89	61.81
KRH54116	Soybean	cytosol	66.7	59.71
EES00653	Sorghum	cytosol	58.97	59.16
EES00724	Sorghum	cytosol	54.67	58.71
Os01t0347000-01	Rice	plasma membrane	54.89	58.67
Zm00001d009183_P008	Maize	cytosol	54.56	58.66
Os01t0311500-01	Rice	nucleus	58.32	58.64
HORVU1Hr1G065070.6	Barley	cytosol	56.93	58.18
TraesCS7B01G450800.1	Wheat	cytosol	53.38	58.13
TraesCS7D01G521000.1	Wheat	cytosol	53.28	58.01
TraesCS1A01G265000.2	Wheat	cytosol	57.68	57.99
TraesCS7A01G533600.2	Wheat	cytosol	53.06	57.78
TraesCS1D01G265200.5	Wheat	cytosol	57.47	57.71
HORVU7Hr1G117420.1	Barley	vacuole	52.95	57.66
TraesCS1B01G275700.3	Wheat	cytosol	57.25	57.44
Zm00001d040641_P002	Maize	cytosol	58.75	53.42
VIT_05s0020g02710.t01	Wine grape	cytosol	6.87	36.99
VIT_12s0059g01650.t01	Wine grape	nucleus	4.94	16.91
VIT_07s0185g00130.t01	Wine grape	cytosol	9.67	11.73
VIT_01s0137g00600.t01	Wine grape	cytosol	10.1	11.22
VIT_13s0019g00070.t01	Wine grape	cytosol	10.74	11.11

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:1.10.1070.11	EntrezGene:100242176	wikigene:100242176	MapMan:18.4.23.2.2
Gene3D:3.90.190.10	InterPro:Actin-fragmin_kin_cat_dom	ProteinID:CCB43360	ProteinID:CCB43360.1	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom
UniProt:F6GT39	EMBL:FN594950	GO:GO:0003674	GO:GO:0003824	GO:GO:0004185	GO:GO:0004721
GO:GO:0004725	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0006470	GO:GO:0006508	GO:GO:0008138	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719
GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016310	GO:GO:0016311
GO:GO:0016740	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538	GO:GO:0035335	GO:GO:0043622
InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021	InterPro:IPR036940	InterPro:Kinase-like_dom_sf	EntrezGene:LOC100242176
wikigene:LOC100242176	PFAM:PF00782	PFAM:PF09192	InterPro:PHS1	InterPro:PI3/4_kinase_cat_sf	ScanProsite:PS00383
PFscan:PS50054	PFscan:PS50056	PANTHER:PTHR10159	PANTHER:PTHR10159:SF346	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195
SUPFAM:SSF52799	SUPFAM:SSF56112	InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	InterPro:Tyr_Pase_AS	UniParc:UPI0001984FF4
ArrayExpress:VIT_17s0000g00360	EnsemblPlantsGene:VIT_17s0000g00360	EnsemblPlants:VIT_17s0000g00360.t01	RefSeq:XP_002280806	RefSeq:XP_002280806.1	SEG:seg

Description

No Description!

Coordinates

chr17:-:249813..257710

Molecular Weight (calculated)

103474.0 Da

IEP (calculated)

6.247

GRAVY (calculated)

-0.408

Length

931 amino acids

Sequence
(BLAST)

001: MVKDQKEEPA IITNTTPHQE EKDPEFGSED LLESPLPLTV TSRVLYMLGD IAAGPAYRFT QWLELVRKRS GKYRSSGFPN RPPRIDTMPF CSGESTVDSR
101: SSLPVEQATE ISLWERLGKA AMMDIESCSF SWDMLSSLHH TEHSSSNDHS EDEMSKALEV TVNSGGVVFF ALFNWPENDD YFLKEGAAVI KFSSSRVATQ
201: SERLGYEFAK WLGVRTPQAR VIHNSSTEWL QIKEAAEKAR DAAISEGDEV GEVTCSELLE ALELSRCLFL MNYVHGSPLL ESSSAFDSRE AAEKTAAALG
301: RVLMLDLVIR NEDRLPCRQL RWRGNPANLL LADKMASTDM DALEEAFDSA IKRYRPRVIR ALQKERRATS VDSRLSPHNS GLVSQSSDLS DAIGSPSSSN
401: TSLEGQALNQ SGLSDFHIVA IDSGVPRRPP AGKRANDQAN YPKLVELMLN SSKYSLNLLH EITGGKLGFA SDDTETATDI LLTEMASVVH EFRRGFRAAL
501: RDLQGFHIFL LTLHQKLDGL LRVFLNIVNR NSCVDFDRED LGASEAQSQA PVIGHCPSPP SKERVINDNH PDLSDPEVQR AAPRLSSSGV RESSDSSSPI
601: SREAWHGKFS RGSVESLRSL RLTTKLRDFH RFAKVDAESS KELEQWNEML RNDAVKLCQE NNFNSGFFEG NDNNGVVDAY ELKVRLEHIL ERIALISDAA
701: NTERPSSITA SLFIGGALAA RSVYTLQHLG ITHILCLCSN EIGQSDSQYP DLFEYKNFSI SDSEDTNISS IFEEASVFID HVEQTGGRVL VHCFEGRSRS
801: ATLVLAYLML RKNFTLLEAW NALKRVHRRA QPNDGFARTL LDLDRKLHGK VSMEWHQRKP PMKVCPICGK NAGLSSSSLK LHLQKSHKKL SSGSVDSAMT
901: MEIQKAISAL KISRGGSVSP TQRQSNSVMD E

Best Arabidopsis Sequence Match ( AT5G23720.1 )
(BLAST)

001: MAEPEKKRDQ PFSQEKDEEK DLYLVHDEHE SPLPLTVTSR VLYMLGDIAS GPAYRFTQWL DLVRKRSATY GSSGFPHRLH RIDDMVTSAG ERNTDPKSPP
101: SRQSSEISLW ERLGKASTVD IDSSCFSWNM LSSLHHTEHS SSTDHSEEDQ SKPLEVTVNS GGVVFFALFN SSSSEDASRK EEAAVIKFAS SRMATQSERL
201: GYEFSKWLGV QIPQARVIHS CNPEWTLIKE ATEKAQAKAT SEGDEVGEMT CSELLEALEL SRCLLLMSYV HGCPMLESMS SFETEEKAER AAAALGRILV
301: LDLVIRNEDR LPCRQLRWRG NPANLLLTDR IVSSAKHHEC SFDEAFDSAI KRYHPKDYRS IQRERRASSV DSRSRLSISD QMLVSQASDF SDITESPRSY
401: DTGLMSPMSD RSVAADFHLV AIDSGVPRRP PAGKRASDQE IYPRLVELLL NSSQYSSNLL HEITEGSLGY PQAEDGEETS NVRSVVTPVV REFRNGFRAG
501: LRDLQEFHIF LVTLHQKLDV LLRAFFSMMD KTMCADFDRE DFAVPESPSH THGHEVNHYP SPSKDRVPSD NSSDHSESDM QKSVPRTPNS ENKEDGSSPK
601: SRESWHGRSG KGGESLSSQR LAAKLRDFHK FAKVDAESNK ELDQWNETLR NEVMKLCQEN GFNTGFFEGS DNNSCTDAYE LKVRLEHILE RISLISKAAN
701: TEKPSMIQEN LFIGGGLAAR SIYTLQHLGI THVLCLCANE IGQSDTQYPD LFEYQNFSIT DDEDSNIESI FQEALDFIKH GEETGGKILV HCFEGRSRSA
801: TVVLAYLMLQ KKLTLLEAWS KLRKVHRRAQ PNDGFARILI NLDKKCHGKV SMEWRQRKPT MKVCPVCGKN AGLSSSSLKL HLQKSHRKLS SGSVDSAMNM
901: EIQKALEALK LSTGRGSSAS SNSFQSHPG

Arabidopsis Description

PHS1Dual specificity protein phosphatase PHS1 [Source:UniProtKB/Swiss-Prot;Acc:Q75QN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.