CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH13458
KRH21856

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23720.1	KRH13458	AT1G53510.1	19392697
AT5G23720.1	KRH21856	AT1G53510.1	19392697

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH54116	Soybean	cytosol	89.02	78.75
KRH41072	Soybean	cytosol	75.98	75.98
KRH59756	Soybean	cytosol	75.43	75.27
VIT_17s0000g00360.t01	Wine grape	cytosol	71.09	70.25
PGSC0003DMT400036964	Potato	cytosol	68.15	68.45
Solyc03g118350.2.1	Tomato	cytosol	68.59	68.22
CDX88046	Canola	nucleus	59.78	63.07
CDX80384	Canola	nucleus	59.89	62.83
AT5G23720.1	Thale cress	nucleus	62.72	62.11
Bra009705.1-P	Field mustard	nucleus	62.17	61.31
GSMUA_Achr9P16510_001	Banana	cytosol	60.11	60.24
GSMUA_Achr3P08210_001	Banana	nucleus	59.35	59.54
PGSC0003DMT400036963	Potato	cytosol	24.02	59.25
GSMUA_Achr9P31030_001	Banana	cytosol	56.52	59.09
GSMUA_Achr11P...	Banana	cytosol	55.22	58.26
TraesCS7D01G521000.1	Wheat	cytosol	54.02	58.13
TraesCS7A01G533600.2	Wheat	cytosol	53.91	58.01
HORVU7Hr1G117420.1	Barley	vacuole	53.8	57.89
TraesCS7B01G450800.1	Wheat	cytosol	53.7	57.78
EES00724	Sorghum	cytosol	53.37	56.63
Os01t0347000-01	Rice	plasma membrane	53.59	56.6
HORVU1Hr1G065070.6	Barley	cytosol	55.98	56.53
Zm00001d009183_P008	Maize	cytosol	53.15	56.47
EES00653	Sorghum	cytosol	56.74	56.25
TraesCS1D01G265200.5	Wheat	cytosol	56.3	55.88
TraesCS1A01G265000.2	Wheat	cytosol	56.2	55.83
TraesCS1B01G275700.3	Wheat	cytosol	56.09	55.6
Os01t0311500-01	Rice	nucleus	55.76	55.4
Zm00001d040641_P002	Maize	cytosol	56.74	50.98
KRH51034	Soybean	cytosol	5.87	31.95
KRH02116	Soybean	cytosol	6.3	31.87
KRH73311	Soybean	cytosol	5.33	18.08
KRH14828	Soybean	cytosol	5.22	17.71
KRH31354	Soybean	nucleus, plastid	9.02	12.5
KRH43105	Soybean	cytosol	8.59	12.08
KRH59249	Soybean	cytosol	8.59	11.97
KRH70517	Soybean	nucleus	10.43	11.46
KRH01585	Soybean	nucleus	10.54	11.41
KRG97518	Soybean	nucleus	7.28	10.97

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	Gene3D:1.10.1070.11	EntrezGene:102661225	MapMan:18.4.23.2.2	Gene3D:3.90.190.10
EMBL:ACUP02002719	InterPro:Actin-fragmin_kin_cat_dom	ncoils:Coil	InterPro:DUSP	InterPro:Dual-sp_phosphatase_cat-dom	EnsemblPlantsGene:GLYMA_04G200300
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0004725	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006464	GO:GO:0006470	GO:GO:0008138	GO:GO:0008150
GO:GO:0008152	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301
GO:GO:0016310	GO:GO:0016311	GO:GO:0016740	GO:GO:0016787	GO:GO:0016791	GO:GO:0019538
GO:GO:0035335	GO:GO:0043622	UniProt:I1JXP8	InterPro:IPR000387	InterPro:IPR020422	InterPro:IPR029021
InterPro:IPR036940	EnsemblPlants:KRH63849	ProteinID:KRH63849	ProteinID:KRH63849.1	InterPro:Kinase-like_dom_sf	PFAM:PF00782
PFAM:PF09192	InterPro:PHS1	InterPro:PI3/4_kinase_cat_sf	ScanProsite:PS00383	PFscan:PS50054	PFscan:PS50056
PANTHER:PTHR10159	PANTHER:PTHR10159:SF346	InterPro:Prot-tyrosine_phosphatase-like	SMART:SM00195	SUPFAM:SSF52799	SUPFAM:SSF56112
InterPro:TYR_PHOSPHATASE_DUAL_dom	InterPro:TYR_PHOSPHATASE_dom	InterPro:Tyr_Pase_AS	UniParc:UPI0002962D42	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:+:47279749..47286597

Molecular Weight (calculated)

102081.0 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.490

Length

920 amino acids

Sequence
(BLAST)

001: MAKEQQKQDP AAITNSFQNQ NQTQELQGKG EVEKEEEAEA PLALSVTYKV LHMLGDITAG PASMFAQWLQ LVRKRTSNCR TSGFPHRSSS MPSSPGESIE
101: DTKNDQQTEI SLWERLGKAE MLDIESSSFS WERLSSLHHT EHTSSNEHSE DEMNRVLEVT VNSGGVVFFA FFNGLGNDDA SSKEAAAVIK ISSSRMATQS
201: ERLGYEFAKW LGVQTPQARV IHNTSLEWTQ IKEATEKARD AASSTTDEVG EMTCTELLEA LELSRCLMFM SYVHGSPLLE SSRAFESQEF AERTSAALGR
301: IMLLDLVIRN EDRLPCRQLR WRGNSANLLL AEKIISNTDT AGETPDSAMN TYGQRVSRTP QKEKRSTSMD GRLNSHNSGL VSQCSGLSDM SFKSQMSLEL
401: MLTDFIVAID SGVPRRPPAG KRADDQVNYP KLVELLLNSS EFSSNLLHDI TGGRLGFPHP EDTNTIIDVH TTDVTSVVHA FRSGFRAALR DLQGFHIFLL
501: TLHQKLDNLL RSFMNTIGKI SSGESEKEDA VVPDSPSPTV VGSCPSPSSK ERLSNDVHQD CSDSESQRTA PRTSSSSGNR DCCDSASSMS REGWHGKHSK
601: GSVESHRGLR LTTKLRDLHK FAKVDSESNK ELEQWNEMLK NDAVKLCLEH NFNTGFFEGS DNNTVVDAYE LKVRLEHILE RIALISEAAN TERPSAVTNS
701: LFIGGALAAR STYTLQRLGI THILCLCTNE IGQSDSQFPD LFTYKNFSVC DDEDSNISSI FEEACDFIDY VEQAGHSVLV HCFEGKSRSA TLVLAYLMLR
801: KKFTLLEAWN ALKRVHRRSQ PNDGFAKILL DLDQKLHGKV SMEWQQRKPM MKNCPICGKN TGLSSSSLKL HLQKSHKKLS SGSVDSAMTI EIQKALTTLK
901: ISHGGSVSPK PRKSHSTIEA

Best Arabidopsis Sequence Match ( AT5G23720.1 )
(BLAST)

001: MAEPEKKRDQ PFSQEKDEEK DLYLVHDEHE SPLPLTVTSR VLYMLGDIAS GPAYRFTQWL DLVRKRSATY GSSGFPHRLH RIDDMVTSAG ERNTDPKSPP
101: SRQSSEISLW ERLGKASTVD IDSSCFSWNM LSSLHHTEHS SSTDHSEEDQ SKPLEVTVNS GGVVFFALFN SSSSEDASRK EEAAVIKFAS SRMATQSERL
201: GYEFSKWLGV QIPQARVIHS CNPEWTLIKE ATEKAQAKAT SEGDEVGEMT CSELLEALEL SRCLLLMSYV HGCPMLESMS SFETEEKAER AAAALGRILV
301: LDLVIRNEDR LPCRQLRWRG NPANLLLTDR IVSSAKHHEC SFDEAFDSAI KRYHPKDYRS IQRERRASSV DSRSRLSISD QMLVSQASDF SDITESPRSY
401: DTGLMSPMSD RSVAADFHLV AIDSGVPRRP PAGKRASDQE IYPRLVELLL NSSQYSSNLL HEITEGSLGY PQAEDGEETS NVRSVVTPVV REFRNGFRAG
501: LRDLQEFHIF LVTLHQKLDV LLRAFFSMMD KTMCADFDRE DFAVPESPSH THGHEVNHYP SPSKDRVPSD NSSDHSESDM QKSVPRTPNS ENKEDGSSPK
601: SRESWHGRSG KGGESLSSQR LAAKLRDFHK FAKVDAESNK ELDQWNETLR NEVMKLCQEN GFNTGFFEGS DNNSCTDAYE LKVRLEHILE RISLISKAAN
701: TEKPSMIQEN LFIGGGLAAR SIYTLQHLGI THVLCLCANE IGQSDTQYPD LFEYQNFSIT DDEDSNIESI FQEALDFIKH GEETGGKILV HCFEGRSRSA
801: TVVLAYLMLQ KKLTLLEAWS KLRKVHRRAQ PNDGFARILI NLDKKCHGKV SMEWRQRKPT MKVCPVCGKN AGLSSSSLKL HLQKSHRKLS SGSVDSAMNM
901: EIQKALEALK LSTGRGSSAS SNSFQSHPG

Arabidopsis Description

PHS1Dual specificity protein phosphatase PHS1 [Source:UniProtKB/Swiss-Prot;Acc:Q75QN6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.