Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 1
  • cytosol 2
  • mitochondrion 1
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, plastid
BaCelLo:plastid
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02230.1 CDX68112 AT1G75950.1 12795696
AT2G02230.1 CDX73212 AT1G75950.1 12795696
AT2G02230.1 CDX80590 AT1G75950.1 12795696
AT2G02230.1 CDX85931 AT1G75950.1 12795696
AT2G02230.1 CDX87650 AT1G75950.1 12795696
AT2G02230.1 CDY13521 AT1G75950.1 12795696
AT2G02230.1 CDY39073 AT1G75950.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024825.1-P Field mustard cytosol 88.14 95.82
CDY03060 Canola cytosol 93.91 90.99
CDY17605 Canola cytosol 73.08 77.55
CDY17601 Canola cytosol 68.59 72.54
CDY03062 Canola cytosol 73.72 72.1
CDY09383 Canola cytosol 68.27 70.07
CDY03059 Canola cytosol 74.04 69.37
CDY15823 Canola cytosol 72.12 67.77
CDY62670 Canola cytosol 6.09 65.52
AT2G02230.1 Thale cress cytosol 64.74 60.12
CDY03057 Canola cytosol 39.42 51.9
CDY17599 Canola cytosol 45.83 50.53
CDY09382 Canola cytosol 42.63 50.0
CDY70803 Canola cytosol 42.31 49.62
CDY03058 Canola cytosol 44.55 48.6
CDY17600 Canola cytosol 44.23 48.25
CDY09378 Canola cytosol 40.71 47.04
CDY09375 Canola cytosol 43.91 46.92
CDY09379 Canola cytosol 37.18 46.77
CDY63170 Canola cytosol 35.58 44.58
CDY68805 Canola cytosol 24.68 44.51
CDY65051 Canola cytosol 32.05 44.25
CDY03056 Canola cytosol 22.12 43.95
VIT_00s0214g00130.t01 Wine grape cytosol 38.78 43.68
Solyc04g050990.2.1 Tomato cytosol 40.71 42.76
CDY09376 Canola cytosol 26.28 42.27
PGSC0003DMT400031292 Potato cytosol 39.74 41.75
CDY09380 Canola cytosol 42.31 41.64
VIT_00s0214g00150.t01 Wine grape cytosol 40.71 41.5
CDX87293 Canola cytosol 33.33 40.62
CDY39994 Canola cytosol 33.33 40.62
Solyc05g055870.2.1 Tomato cytosol 39.74 40.26
CDX88110 Canola cytosol 15.71 40.16
CDY24793 Canola cytosol 18.59 40.0
PGSC0003DMT400060018 Potato cytosol 39.42 39.3
KRG92586 Soybean cytosol, plastid 38.14 39.27
VIT_00s0214g00060.t01 Wine grape cytosol 35.58 38.68
KRH68844 Soybean cytosol 38.78 38.17
CDY72024 Canola plastid 32.69 37.5
CDY31110 Canola plastid 32.05 37.04
CDX95006 Canola cytosol 32.69 36.69
CDY71953 Canola cytosol 31.73 35.61
VIT_00s0214g00090.t01 Wine grape cytosol 38.46 35.61
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 39.74 35.53
CDY38992 Canola cytosol 32.05 35.34
CDY54100 Canola cytosol 31.73 34.98
CDY65052 Canola cytosol 41.67 30.09
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 20.51 29.63
CDY38901 Canola cytosol 24.04 26.98
CDY32595 Canola cytosol 24.68 26.64
CDY45973 Canola cytosol 23.08 24.83
CDY63226 Canola plastid 23.08 24.83
CDX73584 Canola cytosol 22.44 24.14
CDY49201 Canola cytosol 22.44 24.14
CDY57080 Canola cytosol 21.79 24.11
CDX98047 Canola cytosol 22.12 24.04
CDX78140 Canola cytosol 23.08 23.92
CDY47354 Canola cytosol 22.12 23.79
CDY42484 Canola cytosol 20.83 22.81
CDX79690 Canola cytosol 21.47 22.79
CDX84551 Canola cytosol 21.15 22.45
CDX89095 Canola cytosol 20.51 22.38
CDY16361 Canola extracellular 13.46 21.88
CDX95004 Canola peroxisome, plasma membrane, vacuole 22.12 21.36
Protein Annotations
EnsemblPlants:CDY17602EnsemblPlantsGene:GSBRNA2T00001808001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:PP2-likePANTHER:PTHR32278PANTHER:PTHR32278:SF6
PFAM:PF00646PFAM:PF14299PFscan:PS50181ProteinID:CDY17602ProteinID:CDY17602.1SEG:seg
SUPFAM:SSF81383UniParc:UPI0004EE37ACUniProt:A0A078FXX6MapMan:35.1::
Description
BnaA06g34210DBnaA06g34210D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXX6]
Coordinates
chrLK032076:+:59866..61084
Molecular Weight (calculated)
35241.8 Da
IEP (calculated)
4.874
GRAVY (calculated)
-0.449
Length
312 amino acids
Sequence
(BLAST)
001: MEQIEVGGGS SRNRAARLDT LPEDCISMVI YHTSPRDACV AASVSKTVKS AAESDLVWEK FLPQDYSSLV PPRSLDFSSK KEIYMSLADD SLLIDDGKKS
101: FWLEKGSGKK CYMLSAMDLK ITWSDCPAYW QWNTVPDSKF KRVAELRDVC WFEIRGKISC GMLSKGTHYS VYLVFKRAGG RSYGFEDTPM EAQVGFVGKD
201: AASKTFVVLE PIDMDQPSGY RYTSVSLTWV SREDRTRRLR EVGGNVEEPK VRGDGWSEVK LGKVYINDGG YDDDEIEFSI METEQGDWKS AMIFQGVEIR
301: PMKEGEEMVI TK
Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
Arabidopsis Description
PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.