Factsheet for PGSC0003DMT400060018

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001474
PGSC0003DMT400001475
PGSC0003DMT400001476
PGSC0003DMT400001613
PGSC0003DMT400069515

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02300.1	PGSC0003DMT400001613	AT3G47620.1	21798944
AT2G02300.1	PGSC0003DMT400001474	AT3G49580.1	21798944
AT2G02300.1	PGSC0003DMT400001475	AT3G49580.1	21798944
AT2G02300.1	PGSC0003DMT400001476	AT3G49580.1	21798944
AT2G02300.1	PGSC0003DMT400069515	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055870.2.1	Tomato	cytosol	92.33	93.83
PGSC0003DMT400031292	Potato	cytosol	66.45	70.03
KRG92586	Soybean	cytosol, plastid	51.44	53.14
VIT_00s0214g00130.t01	Wine grape	cytosol	46.33	52.35
VIT_00s0214g00150.t01	Wine grape	cytosol	47.6	48.69
VIT_00s0214g00160.t01	Wine grape	cytosol	48.24	48.24
VIT_00s0214g00060.t01	Wine grape	cytosol	43.13	47.04
CDY24793	Canola	cytosol	21.73	46.9
KRH68844	Soybean	cytosol	46.96	46.37
CDY17599	Canola	cytosol	41.85	46.29
CDY03057	Canola	cytosol	34.5	45.57
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	50.8	45.56
PGSC0003DMT400083888	Potato	cytosol	38.34	45.45
Bra024822.1-P	Field mustard	cytosol	31.63	45.41
AT2G02360.1	Thale cress	nucleus	39.3	45.22
AT5G24560.1	Thale cress	cytosol	28.11	45.13
PGSC0003DMT400043434	Potato	cytosol	38.02	44.74
PGSC0003DMT400096249	Potato	cytosol	36.42	44.53
PGSC0003DMT400043441	Potato	cytosol	36.74	44.06
CDY03056	Canola	cytosol	22.04	43.95
CDY09378	Canola	cytosol	37.7	43.7
CDX88110	Canola	cytosol	16.93	43.44
CDY63170	Canola	cytosol	34.5	43.37
PGSC0003DMT400027718	Potato	cytosol	41.53	43.33
CDY65051	Canola	cytosol	30.99	42.92
PGSC0003DMT400063740	Potato	cytosol	38.66	42.16
VIT_00s0214g00090.t01	Wine grape	cytosol	45.37	42.14
CDY09376	Canola	cytosol	25.88	41.75
CDY09383	Canola	cytosol	39.94	41.12
CDY17605	Canola	cytosol	38.34	40.82
CDY09379	Canola	cytosol	32.27	40.73
Bra024825.1-P	Field mustard	cytosol	37.06	40.42
Bra026609.1-P	Field mustard	cytosol	42.49	39.82
CDY15823	Canola	cytosol	42.17	39.76
PGSC0003DMT400063744	Potato	cytosol	35.78	39.72
Bra024823.1-P	Field mustard	cytosol	36.1	39.51
CDY17600	Canola	cytosol	36.1	39.51
PGSC0003DMT400061566	Potato	cytosol	37.06	39.46
Bra026604.1-P	Field mustard	cytosol	40.58	39.44
CDY17602	Canola	cytosol	39.3	39.42
AT2G02250.1	Thale cress	cytosol	38.98	39.35
CDY68805	Canola	cytosol	21.73	39.31
PGSC0003DMT400014139	Potato	cytosol	39.62	39.24
CDY03058	Canola	cytosol	35.78	39.16
CDY09382	Canola	cytosol	33.23	39.1
CDY70803	Canola	cytosol	33.23	39.1
AT2G02240.1	Thale cress	cytosol	39.94	39.06
CDY09375	Canola	cytosol	36.42	39.04
AT2G02230.1	Thale cress	cytosol	41.85	38.99
Bra024827.1-P	Field mustard	cytosol	38.98	38.85
Bra026603.1-P	Field mustard	cytosol	36.1	38.83
CDY03060	Canola	cytosol	39.94	38.82
PGSC0003DMT400054296	Potato	cytosol	39.62	38.51
AT2G02300.1	Thale cress	cytosol	34.82	38.38
Bra026608.1-P	Field mustard	cytosol	33.87	38.13
AT2G02350.2	Thale cress	cytosol, mitochondrion	35.78	38.1
CDY17601	Canola	cytosol	35.78	37.97
CDY03062	Canola	cytosol	38.66	37.93
PGSC0003DMT400076213	Potato	cytosol	28.11	37.77
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	26.84	37.5
AT2G02340.1	Thale cress	cytosol	35.78	36.72
PGSC0003DMT400034146	Potato	cytosol	19.17	36.36
CDY03059	Canola	cytosol	38.66	36.34
Bra024824.1-P	Field mustard	cytosol	38.98	36.2
PGSC0003DMT400061562	Potato	cytosol	38.02	36.17
CDY09380	Canola	cytosol	36.42	35.96
Bra026605.1-P	Field mustard	cytosol	28.75	34.48
AT2G02320.1	Thale cress	mitochondrion	32.27	32.9
Bra026606.1-P	Field mustard	plasma membrane, vacuole	36.1	32.38
AT2G02310.1	Thale cress	cytosol	31.63	32.25
PGSC0003DMT400034143	Potato	cytosol	16.61	31.71
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.41	31.02
PGSC0003DMT400058590	Potato	plastid	24.92	26.99
CDY65052	Canola	cytosol	36.42	26.39
PGSC0003DMT400028899	Potato	cytosol	24.6	26.19
PGSC0003DMT400072413	Potato	cytosol	23.32	25.0
PGSC0003DMT400006947	Potato	cytosol	23.64	24.75
PGSC0003DMT400010881	Potato	plastid	22.68	24.57
PGSC0003DMT400071397	Potato	cytosol	22.04	23.96
PGSC0003DMT400037131	Potato	cytosol	21.09	22.3
PGSC0003DMT400026564	Potato	cytosol	20.45	21.69

Protein Annotations

EnsemblPlants:PGSC0003DMT400060018	EnsemblPlantsGene:PGSC0003DMG400023354	EntrezGene:102591767	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	PFAM:PF14299	PGSC:PGSC0003DMG400023354
RefSeq:XP_006345814.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002969AF6	UniProt:M1C535	MapMan:35.1

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023354]

Coordinates

chr5:-:51450527..51454048

Molecular Weight (calculated)

34897.2 Da

IEP (calculated)

5.471

GRAVY (calculated)

-0.394

Length

313 amino acids

Sequence
(BLAST)

001: MAVENGRSSA VSGGGGDGGD IYHLPEGCIA NVLSLTSPRD ASRLSVIGTV FRSAAESDAV WDRFLPPDYR DIISRSSDGP ESINVGSKKE LYLYLCDHPF
101: FIDGGTKSFS LEKRSGKKCY MLAARSLAII WADTPRYWRW IPLPESRFSE VAELLDVCWF DITGKINTSM LSPDTNYAAY FVFTTKSRTY GFDHQSAEGA
201: VGISGHDRKP QTIFLDPEAA RRHMYQIVPR RLGLLNQMAD ILRGGVNPPP SENNTQARYP QQRSDGWIEV ELGEFFVKRG QDVELEMSLT EVKEGNWKSG
301: LVVEGIEIRP KEG

Best Arabidopsis Sequence Match ( AT2G02240.1 )
(BLAST)

001: MCGQHYTSII SSITTEASFE RVRTHEFIKF SKHKRFDQRH RSMMGQYHSG GEIVSPGTSP FDVLPEDCIS NIISFTSPRD ACVAASVSKT FESAVSSDCV
101: WDKFLPPEYE SLVSRSRVFA SKKELYFALC HNPVLIEDGK KSFWLEKASG KRCIMLSSKE LWITWGSSPE YWQWISIPES RFNKIAELLD VCWFEIRGKT
201: SARVLSPGTR YSAYIVFKTK DRCPGLGHLP VEVGLGLVGQ ESSKRFIYFI GPRDRRGRRE TRDVTKPDQR EDGWMEAELG EFFNEERCDE IEFSVIEIKS
301: PSWKSGLIIQ GIEFRPTKSQ

Arabidopsis Description

MEE66F-box protein At2g02240 [Source:UniProtKB/Swiss-Prot;Acc:Q3E6P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.