Factsheet for PGSC0003DMT400043441

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098190.1.1	Tomato	cytosol	94.64	94.64
PGSC0003DMT400043434	Potato	cytosol	68.2	66.92
PGSC0003DMT400096249	Potato	cytosol	63.22	64.45
PGSC0003DMT400083888	Potato	cytosol	64.37	63.64
PGSC0003DMT400076213	Potato	cytosol	46.74	52.36
PGSC0003DMT400027718	Potato	cytosol	47.51	41.33
VIT_05s0051g00080.t01	Wine grape	cytosol	40.61	40.15
PGSC0003DMT400031292	Potato	cytosol	45.21	39.73
PGSC0003DMT400063740	Potato	cytosol	43.68	39.72
PGSC0003DMT400061566	Potato	cytosol	42.91	38.1
PGSC0003DMT400063744	Potato	cytosol	40.23	37.23
PGSC0003DMT400060018	Potato	cytosol	44.06	36.74
PGSC0003DMT400054296	Potato	cytosol	44.06	35.71
PGSC0003DMT400014139	Potato	cytosol	42.15	34.81
PGSC0003DMT400034146	Potato	cytosol	21.84	34.55
PGSC0003DMT400061562	Potato	cytosol	43.3	34.35
PGSC0003DMT400034143	Potato	cytosol	21.07	33.54
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	27.97	32.59
PGSC0003DMT400071397	Potato	cytosol	24.9	22.57
PGSC0003DMT400058590	Potato	plastid	23.37	21.11
PGSC0003DMT400028899	Potato	cytosol	23.75	21.09
PGSC0003DMT400010881	Potato	plastid	22.61	20.42
PGSC0003DMT400006947	Potato	cytosol	23.37	20.4
PGSC0003DMT400072413	Potato	cytosol	21.84	19.52
PGSC0003DMT400026564	Potato	cytosol	21.46	18.98
PGSC0003DMT400037131	Potato	cytosol	20.69	18.24

Protein Annotations

EnsemblPlants:PGSC0003DMT400043441	EnsemblPlantsGene:PGSC0003DMG400016863	EntrezGene:102588908	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278
PANTHER:PTHR32278:SF2	PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	PGSC:PGSC0003DMG400016863	RefSeq:XP_006349935.1
SUPFAM:SSF81383	UniParc:UPI0002964A6D	UniProt:M1BEM3	MapMan:35.1	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400016863]

Coordinates

chr12:-:59024497..59028322

Molecular Weight (calculated)

29665.0 Da

IEP (calculated)

4.788

GRAVY (calculated)

-0.437

Length

261 amino acids

Sequence
(BLAST)

001: MDYFGLMPED CLSEILSFTS PEDTARLSTS SRGFNSAAES DVVWEKFLPS DYQNIISKSK SLLASPSMKQ LYFSLCDSPI LTDGGKMSFS LDKKTGKKCF
101: MVSARELTIS WSDTPHYWAW SSHPDSRFSE VANLRFVCWL DMRGKIETRL LSKRTNYVVY LVFKLKSGYY GLETANTFVR FVDLESDNEA EERASVVSIS
201: RQEGPGENRS KGRDDEWMEI EMGKFFNDAG EDGDVEARLM EVRRLSAKGG LIVQGIEFRP E

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.