Factsheet for PGSC0003DMT400006947

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g008820.2.1	Tomato	cytosol	97.32	97.32
PGSC0003DMT400028899	Potato	cytosol	83.28	84.69
PGSC0003DMT400072413	Potato	cytosol	77.59	79.45
VIT_08s0007g04190.t01	Wine grape	cytosol	73.91	73.91
KRH67813	Soybean	cytosol	69.57	70.51
KRH20009	Soybean	cytosol, plastid	68.56	68.79
KRH32630	Soybean	cytosol, plastid	68.9	68.67
AT3G53000.1	Thale cress	cytosol	67.89	67.67
CDX73584	Canola	cytosol	64.55	66.55
CDX79690	Canola	cytosol	64.21	65.31
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	64.55	65.2
Bra006966.1-P	Field mustard	cytosol	65.22	64.78
CDX84551	Canola	cytosol	63.55	64.63
CDX78140	Canola	cytosol	64.88	64.45
Bra023077.1-P	Field mustard	cytosol	62.88	63.95
PGSC0003DMT400010881	Potato	plastid	47.49	49.13
PGSC0003DMT400058590	Potato	plastid	47.49	49.13
PGSC0003DMT400071397	Potato	cytosol	46.15	47.92
PGSC0003DMT400026564	Potato	cytosol	47.16	47.8
PGSC0003DMT400037131	Potato	cytosol	43.81	44.26
PGSC0003DMT400063744	Potato	cytosol	24.08	25.53
PGSC0003DMT400027718	Potato	cytosol	24.75	24.67
PGSC0003DMT400083888	Potato	cytosol	21.74	24.62
PGSC0003DMT400063740	Potato	cytosol	23.08	24.04
PGSC0003DMT400031292	Potato	cytosol	23.75	23.91
PGSC0003DMT400043434	Potato	cytosol	21.07	23.68
PGSC0003DMT400060018	Potato	cytosol	24.75	23.64
PGSC0003DMT400061566	Potato	cytosol	23.08	23.47
PGSC0003DMT400043441	Potato	cytosol	20.4	23.37
PGSC0003DMT400054296	Potato	cytosol	25.08	23.29
PGSC0003DMT400076213	Potato	cytosol	17.73	22.75
PGSC0003DMT400061562	Potato	cytosol	24.08	21.88
PGSC0003DMT400096249	Potato	cytosol	18.73	21.88
PGSC0003DMT400034143	Potato	cytosol	10.7	19.51
PGSC0003DMT400014139	Potato	cytosol	20.4	19.3
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	14.38	19.2
PGSC0003DMT400034146	Potato	cytosol	9.03	16.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400006947	EnsemblPlantsGene:PGSC0003DMG400002691	EntrezGene:102601209	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960
PANTHER:PTHR31960:SF7	PFAM:PF14299	PFscan:PS50181	PGSC:PGSC0003DMG400002691	RefSeq:XP_006341188.1	SUPFAM:SSF81383
UniParc:UPI000295B6C4	UniProt:M0ZS80	MapMan:19.2.2.8.1.4.6	:	:	:

Description

ATPP2-A13 [Source:PGSC_GENE;Acc:PGSC0003DMG400002691]

Coordinates

chr9:+:4130843..4138182

Molecular Weight (calculated)

33937.0 Da

IEP (calculated)

6.982

GRAVY (calculated)

-0.420

Length

299 amino acids

Sequence
(BLAST)

001: MGASLSSLTE NESTANGRPG LGDIPENCVA CVFMYLTPPE ICNLARLNHA FRGAASSDSV WDSKLPSNYH HLLDVLPQRI YEGLSKKDIF AFLSRPVPFD
101: DGNKEVWLDR ISGRICMSIS TKAMLITSGE DRRHWNWFPT EESRFHVVAY CQQVWWFEVS GSVKFPFPPD IYTLTFRVRL GKFYKRLGRR VCNFEHTHGW
201: DLGPVRYELF TSDGQHAVSE YSLDDSDQDD ANANLKRGDW IEYKVGEFIV SRSDPATEVR FSMKQIDCTH SKGGLCVDSV SIAPSDLKAG RRKGVSKYQ

Best Arabidopsis Sequence Match ( AT3G53000.1 )
(BLAST)

001: MGSSLSNLND GTNGLAMGPG LGDIPESCVA CVFMYLTPPE ICNLAGLNRS FRGAASSDSV WEKKLPENYQ DLLDLLPPER YHSLSKKDIF AVLSRPIPFD
101: DDNKEVWIDR VTGRVCMAIS ARGMSITGIE DRRYWNWIPT EESRFHVVAY LQQIWWFEVD GTVRFHLPPG VYSLSFRIHL GRFTKRLGRR VCHFELTHGW
201: DLKPVRFSLS TSDGQEASCE YYLDDVERNE ALGKHKRGYW IEYRVGEFIV NGSEPSTEIQ WSMKQIDCTH SKGGLCVDSV FINPIGDVKE HKRKAVLKEA

Arabidopsis Description

PP2A15F-box protein PP2-A15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.