Factsheet for PGSC0003DMT400027718

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014139	Potato	cytosol	67.33	63.92
PGSC0003DMT400061566	Potato	cytosol	58.67	59.86
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	43.67	58.48
PGSC0003DMT400054296	Potato	cytosol	62.0	57.76
PGSC0003DMT400061562	Potato	cytosol	61.67	56.23
PGSC0003DMT400043441	Potato	cytosol	41.33	47.51
PGSC0003DMT400083888	Potato	cytosol	40.0	45.45
PGSC0003DMT400096249	Potato	cytosol	38.67	45.31
PGSC0003DMT400063740	Potato	cytosol	43.33	45.3
PGSC0003DMT400031292	Potato	cytosol	44.67	45.12
PGSC0003DMT400043434	Potato	cytosol	39.33	44.36
PGSC0003DMT400063744	Potato	cytosol	39.33	41.84
PGSC0003DMT400060018	Potato	cytosol	43.33	41.53
KRH55670	Soybean	cytosol	13.0	39.8
PGSC0003DMT400076213	Potato	cytosol	29.33	37.77
KRH55667	Soybean	cytosol	32.67	37.12
KRH55669	Soybean	cytosol	32.0	36.36
PGSC0003DMT400034143	Potato	cytosol	16.33	29.88
PGSC0003DMT400034146	Potato	cytosol	16.0	29.09
PGSC0003DMT400058590	Potato	plastid	24.33	25.26
PGSC0003DMT400071397	Potato	cytosol	24.0	25.0
PGSC0003DMT400006947	Potato	cytosol	24.67	24.75
PGSC0003DMT400028899	Potato	cytosol	24.0	24.49
PGSC0003DMT400072413	Potato	cytosol	23.33	23.97
PGSC0003DMT400010881	Potato	plastid	23.0	23.88
PGSC0003DMT400026564	Potato	cytosol	23.0	23.39
PGSC0003DMT400037131	Potato	cytosol	22.67	22.97

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102584090	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M1AQ37	PFAM:PF00646	PFAM:PF14299
EnsemblPlantsGene:PGSC0003DMG400010681	PGSC:PGSC0003DMG400010681	EnsemblPlants:PGSC0003DMT400027718	InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278
PANTHER:PTHR32278:SF6	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002965049	RefSeq:XP_006351708.1	SEG:seg

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010681]

Coordinates

chr1:+:82793485..82795912

Molecular Weight (calculated)

34377.6 Da

IEP (calculated)

4.459

GRAVY (calculated)

-0.365

Length

300 amino acids

Sequence
(BLAST)

001: MENFNGLSML PEDCTAKILA FTSPLDVCRI SLVSKSLHSA AESDSIWEKF LPSDYQSIIA ASPSPIPEFH SKKDLFVYLC HSPLLIDAGR KSFSLDKRTG
101: KKCYFLGARD LQITWSDTPQ YWKWTSLPES RFPEVAELIH VWWLDILGKI RAGMLSPRTS YTAYLVYKLE DEYGFIYRPS EVSVGISGVE VDTRLAFLVP
201: EGRPQRRDRF EEAEIRESDD DYEVFTPPSD VDMEDASSVM QSDIQRPKLR DDGWFQIELG EFFTENEDDC IEMSMKEVKD SVSHKEGLIV EGIEIRPRIG

Best Arabidopsis Sequence Match ( AT2G02240.1 )
(BLAST)

001: MCGQHYTSII SSITTEASFE RVRTHEFIKF SKHKRFDQRH RSMMGQYHSG GEIVSPGTSP FDVLPEDCIS NIISFTSPRD ACVAASVSKT FESAVSSDCV
101: WDKFLPPEYE SLVSRSRVFA SKKELYFALC HNPVLIEDGK KSFWLEKASG KRCIMLSSKE LWITWGSSPE YWQWISIPES RFNKIAELLD VCWFEIRGKT
201: SARVLSPGTR YSAYIVFKTK DRCPGLGHLP VEVGLGLVGQ ESSKRFIYFI GPRDRRGRRE TRDVTKPDQR EDGWMEAELG EFFNEERCDE IEFSVIEIKS
301: PSWKSGLIIQ GIEFRPTKSQ

Arabidopsis Description

MEE66F-box protein At2g02240 [Source:UniProtKB/Swiss-Prot;Acc:Q3E6P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.