Factsheet for PGSC0003DMT400076213

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043441	Potato	cytosol	52.36	46.74
PGSC0003DMT400043434	Potato	cytosol	51.07	44.74
PGSC0003DMT400083888	Potato	cytosol	49.36	43.56
PGSC0003DMT400096249	Potato	cytosol	44.21	40.23
PGSC0003DMT400063744	Potato	cytosol	37.34	30.85
VIT_05s0051g00080.t01	Wine grape	cytosol	34.76	30.68
PGSC0003DMT400031292	Potato	cytosol	38.2	29.97
PGSC0003DMT400063740	Potato	cytosol	36.48	29.62
PGSC0003DMT400027718	Potato	cytosol	37.77	29.33
PGSC0003DMT400061566	Potato	cytosol	36.91	29.25
PGSC0003DMT400054296	Potato	cytosol	39.48	28.57
PGSC0003DMT400060018	Potato	cytosol	37.77	28.11
PGSC0003DMT400061562	Potato	cytosol	37.77	26.75
PGSC0003DMT400014139	Potato	cytosol	36.05	26.58
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	25.32	26.34
PGSC0003DMT400071397	Potato	cytosol	24.89	20.14
PGSC0003DMT400034143	Potato	cytosol	13.73	19.51
PGSC0003DMT400058590	Potato	plastid	23.61	19.03
PGSC0003DMT400034146	Potato	cytosol	13.3	18.79
PGSC0003DMT400010881	Potato	plastid	23.18	18.69
PGSC0003DMT400072413	Potato	cytosol	22.75	18.15
PGSC0003DMT400026564	Potato	cytosol	22.75	17.97
PGSC0003DMT400006947	Potato	cytosol	22.75	17.73
PGSC0003DMT400028899	Potato	cytosol	22.32	17.69
PGSC0003DMT400037131	Potato	cytosol	21.03	16.55

Protein Annotations

EnsemblPlants:PGSC0003DMT400076213	EnsemblPlantsGene:PGSC0003DMG403029631	EntrezGene:102584683	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
PFAM:PF14299	PFscan:PS50181	PGSC:PGSC0003DMG403029631	RefSeq:XP_006360350.1	SUPFAM:SSF81383	UniParc:UPI000296EB34
UniProt:M1CWD2	MapMan:35.1	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG403029631]

Coordinates

chr9:+:58552129..58553942

Molecular Weight (calculated)

26661.4 Da

IEP (calculated)

4.676

GRAVY (calculated)

-0.430

Length

233 amino acids

Sequence
(BLAST)

001: MNPFTMLPEG CISEIISFTT PVDTIRSSVI SRGFKAAAES DIVWDKFLPS DHQNIVSRSV SPILFDNKED LYFRLSESPI LLDEGKMSFW LDKTNGKKCY
101: LLSSRQLTIS FSDTELFWEH TFDADSRYPR QDWNSRYHGL ELTNAMVRFV SQENEDEAEE RATIVILAAR APRNLKGKLP EKRTDGWLEV EIGKFYNGES
201: GDDNGDVEAR LLDSRPFHAK VGLIIEGIEF RPI

Best Arabidopsis Sequence Match ( AT5G24560.1 )
(BLAST)

001: MNFLDLPEEC IATMISFTSP FDACRISAVS KLLRSAADSN TTWERFLPSD YRMYIDNSLS RFSNKQLFLR FCESPLLIED GRTSFWMEKR SGKKCWMLSA
101: RKLDIVWVDS PEFWIWVSIP DSRFEEVAGL LMVCWFEIRG TQESREDGWL EIELGEYYVG FDDEEIEMSV LETREGGWKG GIIVQGIEIR PKELL

Arabidopsis Description

AtPP2-B12phloem protein 2-B12 [Source:TAIR;Acc:AT5G24560]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.