Factsheet for PGSC0003DMT400061562

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054296	Potato	cytosol	91.79	93.79
PGSC0003DMT400061566	Potato	cytosol	72.64	81.29
Solyc11g006740.1.1	Tomato	cytosol	38.3	67.74
PGSC0003DMT400027718	Potato	cytosol	56.23	61.67
PGSC0003DMT400014139	Potato	cytosol	51.37	53.48
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	34.65	50.89
PGSC0003DMT400043441	Potato	cytosol	34.35	43.3
PGSC0003DMT400096249	Potato	cytosol	33.43	42.97
PGSC0003DMT400043434	Potato	cytosol	34.35	42.48
KRH55670	Soybean	cytosol	12.46	41.84
PGSC0003DMT400083888	Potato	cytosol	33.13	41.29
PGSC0003DMT400031292	Potato	cytosol	37.08	41.08
PGSC0003DMT400063740	Potato	cytosol	34.35	39.37
PGSC0003DMT400063744	Potato	cytosol	33.43	39.01
PGSC0003DMT400060018	Potato	cytosol	36.17	38.02
PGSC0003DMT400076213	Potato	cytosol	26.75	37.77
KRH55669	Soybean	cytosol	30.09	37.5
KRH55667	Soybean	cytosol	30.09	37.5
PGSC0003DMT400034143	Potato	cytosol	13.98	28.05
PGSC0003DMT400034146	Potato	cytosol	12.46	24.85
PGSC0003DMT400028899	Potato	cytosol	21.88	24.49
PGSC0003DMT400006947	Potato	cytosol	21.88	24.08
PGSC0003DMT400072413	Potato	cytosol	21.28	23.97
PGSC0003DMT400058590	Potato	plastid	20.67	23.53
PGSC0003DMT400010881	Potato	plastid	19.76	22.49
PGSC0003DMT400071397	Potato	cytosol	18.84	21.53
PGSC0003DMT400026564	Potato	cytosol	18.24	20.34
PGSC0003DMT400037131	Potato	cytosol	18.24	20.27

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:102584136	MapMan:35.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M1C7P9	PFAM:PF00646	PFAM:PF14299
EnsemblPlantsGene:PGSC0003DMG400023964	PGSC:PGSC0003DMG400023964	EnsemblPlants:PGSC0003DMT400061562	InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278
PANTHER:PTHR32278:SF6	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000294CC68	RefSeq:XP_006361490.2	SEG:seg

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023964]

Coordinates

chr11:-:5546467..5548249

Molecular Weight (calculated)

37292.1 Da

IEP (calculated)

4.491

GRAVY (calculated)

-0.309

Length

329 amino acids

Sequence
(BLAST)

001: MKGNGKTHPM EKEQNEKNES CNTCLSMLPE GCIAEIFAFT SPPVVCRFSL VSTSLRSAAD SDSVWAKFLP SDYPSIIAKS PTPIPDFPSL KDAYVYLADH
101: PLLIDEGRKT FSLDKWTGKK CYFLGARDLN IVSSDTPDAW EWTSVPESRF PEVAQLKFIR WLQIWGTIRA GILSLLTSYT AYFVYKLGDD SYGFDTRHME
201: VSVGISGVES ANVRIAFLHL NPKFIPEDMY TSPYTPPSPY IEYCWMGPLW PGIDYDPPED VDWDHHPSNL KLDKPVPKLR DDGWFELELG NFFTENEDDC
301: IELRMEDVKT GCTKQGLIVE GIEIRPTIA

Best Arabidopsis Sequence Match ( AT1G09155.1 )
(BLAST)

001: MMLPEACVAT ILSFTTPADT ISSAAVSSVF RVAGDSDFVW EKFLPTDYCH VISRSTDPHR IFSSKKELYR CLCESILIDN GRKIFKIEKL SGKISYILSS
101: RDLSITWSDQ RHYWSWSPRS DSRFSEGVQL IMTDWLEIIG KIQTGALSPN TNYGAYLIMK VTSRAYGLDL VPAETSIKVG NGEKKIKSTY LSCLDNKKQQ
201: MERVFYGQRE QRMATHEVVR SHRREPEVRD DGWMEIELGE FETGSGEGDD DKEVVMSLTE VKGYQLKGGI AIDGIEVRPK PLKVRAGTN

Arabidopsis Description

PP2B15F-box protein PP2-B15 [Source:UniProtKB/Swiss-Prot;Acc:O80494]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.