Factsheet for PGSC0003DMT400097622

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, vacuole
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	cytosol

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014139	Potato	cytosol	87.5	62.03
Solyc10g051160.1.1	Tomato	cytosol	61.61	51.11
PGSC0003DMT400027718	Potato	cytosol	58.48	43.67
PGSC0003DMT400061566	Potato	cytosol	46.43	35.37
PGSC0003DMT400054296	Potato	cytosol	50.0	34.78
PGSC0003DMT400061562	Potato	cytosol	50.89	34.65
PGSC0003DMT400031292	Potato	cytosol	38.84	29.29
PGSC0003DMT400083888	Potato	cytosol	33.93	28.79
PGSC0003DMT400043434	Potato	cytosol	33.48	28.2
PGSC0003DMT400043441	Potato	cytosol	32.59	27.97
PGSC0003DMT400063744	Potato	cytosol	34.82	27.66
PGSC0003DMT400096249	Potato	cytosol	31.25	27.34
PGSC0003DMT400063740	Potato	cytosol	34.82	27.18
PGSC0003DMT400060018	Potato	cytosol	37.5	26.84
PGSC0003DMT400076213	Potato	cytosol	26.34	25.32
KRH55669	Soybean	cytosol	27.68	23.48
KRH55667	Soybean	cytosol	27.68	23.48
PGSC0003DMT400034143	Potato	cytosol	14.29	19.51
KRH55670	Soybean	cytosol	8.04	18.37
PGSC0003DMT400058590	Potato	plastid	20.54	15.92
PGSC0003DMT400010881	Potato	plastid	19.2	14.88
PGSC0003DMT400028899	Potato	cytosol	19.2	14.63
PGSC0003DMT400071397	Potato	cytosol	18.75	14.58
PGSC0003DMT400034146	Potato	cytosol	10.71	14.55
PGSC0003DMT400006947	Potato	cytosol	19.2	14.38
PGSC0003DMT400037131	Potato	cytosol	18.3	13.85
PGSC0003DMT400072413	Potato	cytosol	17.86	13.7
PGSC0003DMT400026564	Potato	cytosol	17.86	13.56

Protein Annotations

EnsemblPlants:PGSC0003DMT400097622	EnsemblPlantsGene:PGSC0003DMG400047193	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6	PFAM:PF14299
PGSC:PGSC0003DMG400047193	UniParc:UPI0002949A51	UniProt:M1E117	MapMan:35.1	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400047193]

Coordinates

chr10:+:43848360..43849345

Molecular Weight (calculated)

25854.7 Da

IEP (calculated)

4.409

GRAVY (calculated)

-0.350

Length

224 amino acids

Sequence
(BLAST)

001: ERFLPSDYQS IISASLTPVP DFVSKKDLYV YLCRHPLLID SGHKSFSLEK RSGKKCYFLG ARDLDIALVD IPQYWEWTSL PESRFPEVAK LKRIWSVDIG
101: EVSVGVFGVE LDKRFATLVP EGEESIYNLP CDLQDELKKV YEVLSNLPSD AEDDDPGIRD DIYLALQHLP ENVSNRLQLI MRRPKLRDDG WFEIELGEFY
201: TENEDDRIEM NLKECASLKT GLIF

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.