Factsheet for PGSC0003DMT400063744

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400026695

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G56250.1	PGSC0003DMT400026695	AT5G44110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100010.2.1	Tomato	cytosol	91.49	92.81
VIT_14s0060g02000.t01	Wine grape	cytosol	58.51	57.29
VIT_14s0060g02020.t01	Wine grape	cytosol	56.38	55.79
KRH68480	Soybean	cytosol	51.77	50.87
PGSC0003DMT400063740	Potato	cytosol	51.06	50.17
KRG96762	Soybean	cytosol	50.71	49.83
KRH33867	Soybean	cytosol	46.1	49.24
GSMUA_Achr1P20450_001	Banana	plastid	45.04	49.22
GSMUA_Achr6P36620_001	Banana	cytosol	42.2	45.95
CDY72024	Canola	plastid	43.97	45.59
GSMUA_Achr1P05750_001	Banana	cytosol	44.33	45.29
Bra038174.1-P	Field mustard	cytosol	45.39	45.23
CDY31110	Canola	plastid	43.26	45.19
Bra018579.1-P	Field mustard	cytosol	44.33	44.96
CDY71953	Canola	cytosol	44.33	44.96
GSMUA_Achr1P05730_001	Banana	cytosol	42.55	44.94
Bra030758.1-P	Field mustard	cytosol	42.91	44.49
CDY54100	Canola	cytosol	44.33	44.17
AT1G56250.1	Thale cress	cytosol	43.97	43.97
AT1G56240.1	Thale cress	cytosol	43.97	43.66
AT1G09155.1	Thale cress	cytosol	44.33	43.25
CDX95006	Canola	cytosol	42.2	42.81
CDY38992	Canola	cytosol	42.91	42.76
PGSC0003DMT400083888	Potato	cytosol	38.3	40.91
PGSC0003DMT400031292	Potato	cytosol	42.91	40.74
PGSC0003DMT400043441	Potato	cytosol	37.23	40.23
PGSC0003DMT400096249	Potato	cytosol	35.82	39.45
PGSC0003DMT400027718	Potato	cytosol	41.84	39.33
GSMUA_Achr1P05720_001	Banana	cytosol	39.01	39.15
PGSC0003DMT400043434	Potato	cytosol	36.52	38.72
PGSC0003DMT400014139	Potato	cytosol	41.84	37.34
PGSC0003DMT400076213	Potato	cytosol	30.85	37.34
GSMUA_Achr5P10170_001	Banana	cytosol	20.92	36.88
PGSC0003DMT400060018	Potato	cytosol	39.72	35.78
GSMUA_Achr8P03670_001	Banana	nucleus	36.17	35.66
EES05998	Sorghum	cytosol	35.11	35.61
TraesCS4B01G262300.1	Wheat	cytosol	33.33	35.61
HORVU2Hr1G104500.6	Barley	cytosol	32.98	35.5
PGSC0003DMT400061566	Potato	cytosol	36.88	35.37
TraesCS4D01G262300.1	Wheat	cytosol	32.98	35.09
Os02t0813083-00	Rice	extracellular	14.18	35.09
HORVU6Hr1G089430.1	Barley	cytosol, plastid	39.36	35.02
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	27.66	34.82
KXG28410	Sorghum	cytosol	33.33	34.81
PGSC0003DMT400054296	Potato	cytosol	39.72	34.78
TraesCS7A01G063600.1	Wheat	cytosol, nucleus, peroxisome	32.27	34.73
TraesCS5D01G566000.2	Wheat	cytosol	38.3	34.73
TraesCS6A01G381900.1	Wheat	cytosol	38.65	34.49
CDY62670	Canola	cytosol	3.55	34.48
Os02t0813000-00	Rice	cytosol	28.01	34.35
EES05996	Sorghum	cytosol	33.69	34.05
TraesCS5B01G558800.1	Wheat	nucleus	35.46	34.01
Os02t0813350-01	Rice	cytosol	35.82	34.01
TraesCS6B01G423500.1	Wheat	cytosol	35.82	34.01
TraesCS6D01G366600.1	Wheat	cytosol	38.3	33.96
TraesCS6D01G369200.1	Wheat	cytosol	35.46	33.9
TraesCS6B01G421100.1	Wheat	cytosol	37.59	33.54
TraesCS6B01G422300.1	Wheat	cytosol	35.11	33.45
PGSC0003DMT400061562	Potato	cytosol	39.01	33.43
GSMUA_Achr9P02770_001	Banana	nucleus	33.69	33.33
TraesCS6D01G369100.1	Wheat	cytosol	35.11	33.33
TraesCS5B01G560100.1	Wheat	cytosol	36.88	33.23
Os02t0813166-00	Rice	cytosol, plastid	30.85	33.21
TraesCS6A01G384000.2	Wheat	cytosol	34.75	33.0
TraesCS7D01G351500.1	Wheat	cytosol	33.69	32.99
TraesCS6A01G384100.1	Wheat	cytosol	34.4	32.66
TraesCS6B01G423200.1	Wheat	cytosol	34.75	32.45
TraesCS4A01G320400.1	Wheat	cytosol	29.43	32.42
TraesCS3B01G018900.1	Wheat	cytosol	34.4	32.33
TraesCS7A01G371000.1	Wheat	cytosol	32.98	32.18
TraesCS5B01G559800.1	Wheat	cytosol	34.4	32.12
TraesCS6D01G368000.1	Wheat	cytosol	34.75	31.92
TraesCS6B01G422400.1	Wheat	cytosol	33.69	31.88
KXG31332	Sorghum	cytosol	34.4	31.8
Zm00001d018452_P001	Maize	cytosol, extracellular	34.04	31.79
Zm00001d053172_P001	Maize	cytosol	33.33	31.76
TraesCS7D01G058100.1	Wheat	cytosol	29.43	31.68
TraesCS6D01G368900.1	Wheat	cytosol	34.04	31.27
TraesCS5B01G560000.1	Wheat	cytosol	34.75	31.21
TraesCS6B01G423400.1	Wheat	cytosol	34.75	31.21
HORVU7Hr1G012610.1	Barley	cytosol	32.62	31.19
Os04t0280500-00	Rice	cytosol	16.67	31.13
Os02t0812500-01	Rice	cytosol	36.52	31.02
HORVU6Hr1G089480.1	Barley	cytosol, extracellular	18.79	30.99
TraesCS6D01G369000.1	Wheat	cytosol	34.4	30.99
TraesCS4A01G319200.1	Wheat	cytosol	35.11	30.94
OQU85929	Sorghum	cytosol	31.21	30.88
KXG31333	Sorghum	cytosol	32.98	30.59
Os12t0131400-01	Rice	nucleus	32.62	30.46
Zm00001d051936_P001	Maize	cytosol	33.69	30.35
HORVU6Hr1G090000.1	Barley	cytosol, plastid	36.17	30.18
Os08t0150700-01	Rice	cytosol	31.91	30.1
Zm00001d032787_P001	Maize	cytosol	31.21	29.93
TraesCS5B01G558600.1	Wheat	cytosol	29.08	29.93
EES05994	Sorghum	cytosol	35.82	29.88
TraesCS7D01G300300.1	Wheat	cytosol	31.56	29.87
HORVU0Hr1G021610.3	Barley	cytosol	34.4	29.85
TraesCS6A01G383900.1	Wheat	cytosol	33.33	29.84
TraesCS3A01G079300.1	Wheat	cytosol	32.27	29.84
PGSC0003DMT400034146	Potato	cytosol	17.38	29.7
TraesCS7A01G304800.1	Wheat	cytosol	31.21	29.63
TraesCS7B01G205100.1	Wheat	cytosol	31.21	29.63
HORVU7Hr1G072570.3	Barley	cytosol	30.85	29.59
HORVU6Hr1G090010.2	Barley	cytosol, nucleus, plastid	35.46	29.41
TraesCS3D01G079700.1	Wheat	cytosol	30.85	29.29
TraesCS3B01G094500.1	Wheat	cytosol	31.56	29.09
TraesCSU01G190600.1	Wheat	cytosol, mitochondrion	32.98	29.06
TraesCSU01G197600.1	Wheat	cytosol, mitochondrion	32.98	29.06
HORVU3Hr1G014270.1	Barley	cytosol	31.91	28.85
TraesCS4A01G041300.1	Wheat	plastid	32.62	28.75
Zm00001d024621_P001	Maize	cytosol	30.85	28.34
Zm00001d018451_P001	Maize	cytosol	34.4	28.2
PGSC0003DMT400034143	Potato	cytosol	16.31	28.05
TraesCS5D01G035000.1	Wheat	cytosol, mitochondrion	33.33	27.98
TraesCS7A01G063200.1	Wheat	cytosol	10.64	27.78
TraesCS6D01G043900.1	Wheat	cytosol	29.43	27.67
HORVU5Hr1G124090.2	Barley	cytosol	29.43	27.39
TraesCS7D01G519100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.08	26.62
TraesCS7D01G518300.2	Wheat	cytosol	13.48	26.57
TraesCS3D01G083600.1	Wheat	cytosol	29.08	26.54
OQU85933	Sorghum	cytosol, mitochondrion	24.11	26.46
TraesCS6D01G367900.1	Wheat	cytosol	26.95	26.39
TraesCS7B01G449100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.72	26.3
TraesCS3A01G082500.1	Wheat	plastid	19.5	26.19
TraesCS7A01G530500.1	Wheat	extracellular	13.12	26.06
TraesCS7D01G518400.1	Wheat	cytosol	29.08	25.79
TraesCS7A01G531700.1	Wheat	cytosol	28.72	25.71
TraesCS7B01G448100.1	Wheat	cytosol, extracellular	28.37	25.4
TraesCS3B01G097600.1	Wheat	cytosol	24.47	24.91
PGSC0003DMT400028899	Potato	cytosol	25.89	24.83
Os12t0129700-01	Rice	cytosol	32.62	24.66
PGSC0003DMT400006947	Potato	cytosol	25.53	24.08
PGSC0003DMT400072413	Potato	cytosol	24.82	23.97
TraesCS7A01G530600.1	Wheat	cytosol, mitochondrion	29.08	23.91
TraesCS6B01G422200.1	Wheat	mitochondrion	20.21	23.65
PGSC0003DMT400071397	Potato	cytosol	24.11	23.61
PGSC0003DMT400058590	Potato	plastid	24.11	23.53
PGSC0003DMT400010881	Potato	plastid	22.7	22.15
OQU92610	Sorghum	mitochondrion	28.72	21.72
PGSC0003DMT400037131	Potato	cytosol	22.34	21.28
PGSC0003DMT400026564	Potato	cytosol	21.99	21.02
Os02t0812600-00	Rice	extracellular	32.62	20.18
CDX95004	Canola	peroxisome, plasma membrane, vacuole	21.99	19.2
OQU85932	Sorghum	mitochondrion	31.56	15.86
TraesCS6D01G368100.1	Wheat	cytosol	28.72	14.46

Protein Annotations

EnsemblPlants:PGSC0003DMT400063744	EnsemblPlantsGene:PGSC0003DMG400024771	EntrezGene:102588330	EntrezGene:102588660	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	ncoils:Coil
PANTHER:PTHR32278	PANTHER:PTHR32278:SF15	PFAM:PF14299	PFscan:PS50181	PGSC:PGSC0003DMG400024771	RefSeq:XP_006344703.1
SEG:seg	SUPFAM:SSF81383	UniParc:UPI0002951067	UniProt:M1CB55	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024771]

Coordinates

chr1:-:77701447..77703117

Molecular Weight (calculated)

31876.4 Da

IEP (calculated)

5.996

GRAVY (calculated)

-0.249

Length

282 amino acids

Sequence
(BLAST)

001: MVATGEHLYD LPEDCISSII CLTSPRDALK LSLVSSIFRS VAELDCVWDA FLPSDWQHIA TKSVTPLKFS SKRDLFFCLC NSILIDDGNK SFALDKLTGK
101: KSYVMSAKEL SILYGDEPTH WNWKAIPESR FAEVAELKTI CRLEIQGKMK TGDLSPNTTY GAYLLMKISD RSFGLDSIPS EISISVGDQE SVSSTAYLRH
201: PKSKKLESLF YRNRVETLKA RVNKGEEKMV REREDGWLEI EIGEFFNGGY GDEEIIMKLM EVKGYHIKGG LIIEGIELRP KH

Best Arabidopsis Sequence Match ( AT1G09155.1 )
(BLAST)

001: MMLPEACVAT ILSFTTPADT ISSAAVSSVF RVAGDSDFVW EKFLPTDYCH VISRSTDPHR IFSSKKELYR CLCESILIDN GRKIFKIEKL SGKISYILSS
101: RDLSITWSDQ RHYWSWSPRS DSRFSEGVQL IMTDWLEIIG KIQTGALSPN TNYGAYLIMK VTSRAYGLDL VPAETSIKVG NGEKKIKSTY LSCLDNKKQQ
201: MERVFYGQRE QRMATHEVVR SHRREPEVRD DGWMEIELGE FETGSGEGDD DKEVVMSLTE VKGYQLKGGI AIDGIEVRPK PLKVRAGTN

Arabidopsis Description

PP2B15F-box protein PP2-B15 [Source:UniProtKB/Swiss-Prot;Acc:O80494]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.