Factsheet for PGSC0003DMT400028899

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g085490.1.1	Tomato	cytosol	95.92	94.31
PGSC0003DMT400006947	Potato	cytosol	84.69	83.28
PGSC0003DMT400072413	Potato	cytosol	77.21	77.74
VIT_08s0007g04190.t01	Wine grape	cytosol	72.11	70.9
KRH67813	Soybean	cytosol	68.71	68.47
KRH32630	Soybean	cytosol, plastid	68.71	67.33
KRH20009	Soybean	cytosol, plastid	67.69	66.78
AT3G53000.1	Thale cress	cytosol	68.03	66.67
CDX73584	Canola	cytosol	65.31	66.21
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	65.31	64.86
Bra006966.1-P	Field mustard	cytosol	65.65	64.12
CDX78140	Canola	cytosol	65.31	63.79
CDX79690	Canola	cytosol	63.27	63.27
CDX84551	Canola	cytosol	62.93	62.93
Bra023077.1-P	Field mustard	cytosol	62.24	62.24
PGSC0003DMT400010881	Potato	plastid	49.32	50.17
PGSC0003DMT400058590	Potato	plastid	48.98	49.83
PGSC0003DMT400071397	Potato	cytosol	46.94	47.92
PGSC0003DMT400026564	Potato	cytosol	47.62	47.46
PGSC0003DMT400037131	Potato	cytosol	44.56	44.26
PGSC0003DMT400063744	Potato	cytosol	24.83	25.89
PGSC0003DMT400083888	Potato	cytosol	22.79	25.38
PGSC0003DMT400043434	Potato	cytosol	22.45	24.81
PGSC0003DMT400060018	Potato	cytosol	26.19	24.6
PGSC0003DMT400031292	Potato	cytosol	24.49	24.24
PGSC0003DMT400063740	Potato	cytosol	23.47	24.04
PGSC0003DMT400027718	Potato	cytosol	24.49	24.0
PGSC0003DMT400061566	Potato	cytosol	23.81	23.81
PGSC0003DMT400043441	Potato	cytosol	21.09	23.75
PGSC0003DMT400054296	Potato	cytosol	24.83	22.67
PGSC0003DMT400076213	Potato	cytosol	17.69	22.32
PGSC0003DMT400061562	Potato	cytosol	24.49	21.88
PGSC0003DMT400096249	Potato	cytosol	19.05	21.88
PGSC0003DMT400014139	Potato	cytosol	20.75	19.3
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	14.63	19.2
PGSC0003DMT400034143	Potato	cytosol	10.54	18.9
PGSC0003DMT400034146	Potato	cytosol	9.18	16.36

Protein Annotations

EnsemblPlants:PGSC0003DMT400028899	EnsemblPlantsGene:PGSC0003DMG400011118	EntrezGene:102596267	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960
PANTHER:PTHR31960:SF7	PFAM:PF14299	PFscan:PS50181	PGSC:PGSC0003DMG400011118	RefSeq:XP_006338946.1	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI000296F3D2	UniProt:M1ARV3	MapMan:19.2.2.8.1.4.6	:	:

Description

ATPP2-A13 [Source:PGSC_GENE;Acc:PGSC0003DMG400011118]

Coordinates

chr10:+:53467880..53472322

Molecular Weight (calculated)

33119.2 Da

IEP (calculated)

6.664

GRAVY (calculated)

-0.354

Length

294 amino acids

Sequence
(BLAST)

001: MGASLSNLTE NESGNGRPGL GDIPENCVAC VFMYLNPPEI CNLARLNRAF RGAASSDAVW ESKLPSNYHH LLDLLPPQNY DGLSKKDIFA FLARSVPFDD
101: GNKEVWLDRI SGKICMSISS KAMLITNVED RRHWNWFPTE ESRFHVVAYC QQVWWFELSG TVNFPFPPGI YTVTFRVHLG KIFKRLGRRA CNFEHTHGWD
201: LGPVRYELST SDGQHAVNEC FIDDTGQDDP NGNIRRGSWI EYKVGEFIVS TSDPVTEVKF SMKQIDCTHS KGGLCVDSVS ITPSDLKVHP RKGV

Best Arabidopsis Sequence Match ( AT3G53000.1 )
(BLAST)

001: MGSSLSNLND GTNGLAMGPG LGDIPESCVA CVFMYLTPPE ICNLAGLNRS FRGAASSDSV WEKKLPENYQ DLLDLLPPER YHSLSKKDIF AVLSRPIPFD
101: DDNKEVWIDR VTGRVCMAIS ARGMSITGIE DRRYWNWIPT EESRFHVVAY LQQIWWFEVD GTVRFHLPPG VYSLSFRIHL GRFTKRLGRR VCHFELTHGW
201: DLKPVRFSLS TSDGQEASCE YYLDDVERNE ALGKHKRGYW IEYRVGEFIV NGSEPSTEIQ WSMKQIDCTH SKGGLCVDSV FINPIGDVKE HKRKAVLKEA

Arabidopsis Description

PP2A15F-box protein PP2-A15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.