Factsheet for PGSC0003DMT400083888

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044930.1.1	Tomato	cytosol	86.36	87.02
PGSC0003DMT400043434	Potato	cytosol	82.95	82.33
PGSC0003DMT400043441	Potato	cytosol	63.64	64.37
PGSC0003DMT400096249	Potato	cytosol	56.82	58.59
PGSC0003DMT400076213	Potato	cytosol	43.56	49.36
PGSC0003DMT400063740	Potato	cytosol	47.35	43.55
PGSC0003DMT400031292	Potato	cytosol	45.45	40.4
PGSC0003DMT400027718	Potato	cytosol	45.45	40.0
VIT_05s0051g00080.t01	Wine grape	cytosol	39.77	39.77
PGSC0003DMT400060018	Potato	cytosol	45.45	38.34
PGSC0003DMT400063744	Potato	cytosol	40.91	38.3
PGSC0003DMT400061566	Potato	cytosol	41.67	37.41
PGSC0003DMT400034143	Potato	cytosol	21.97	35.37
PGSC0003DMT400054296	Potato	cytosol	42.42	34.78
PGSC0003DMT400014139	Potato	cytosol	41.29	34.49
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	28.79	33.93
PGSC0003DMT400034146	Potato	cytosol	20.83	33.33
PGSC0003DMT400061562	Potato	cytosol	41.29	33.13
PGSC0003DMT400071397	Potato	cytosol	26.89	24.65
PGSC0003DMT400058590	Potato	plastid	26.52	24.22
PGSC0003DMT400010881	Potato	plastid	25.76	23.53
PGSC0003DMT400028899	Potato	cytosol	25.38	22.79
PGSC0003DMT400026564	Potato	cytosol	24.62	22.03
PGSC0003DMT400006947	Potato	cytosol	24.62	21.74
PGSC0003DMT400037131	Potato	cytosol	23.86	21.28
PGSC0003DMT400072413	Potato	cytosol	22.73	20.55

Protein Annotations

EnsemblPlants:PGSC0003DMT400083888	EnsemblPlantsGene:PGSC0003DMG400033643	EntrezGene:102600347	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278
PANTHER:PTHR32278:SF2	PFAM:PF14299	PGSC:PGSC0003DMG400033643	RefSeq:XP_006366161.1	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI000294DE7D	UniProt:M1D7A5	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400033643]

Coordinates

chr12:+:51938839..51940314

Molecular Weight (calculated)

30115.9 Da

IEP (calculated)

5.085

GRAVY (calculated)

-0.258

Length

264 amino acids

Sequence
(BLAST)

001: MDFIRLLPEG CVSDILSFTS PKDAAISSAI SRGFNSAAES DLLWEKFLPE DYEDISSRYV SQRICSSKKE LYFSLCDSPV LMDGGRLSFS LDKKTGKKCF
101: MISARELVIS WGVDTPWYWE WTSHPDSRFP EVAHLHTVCW LDIRGTIGTQ MLSKRTKYVV YLVFKLAEEH HGLEIAYAYV RFVNRVSDEE ADEGASTLSL
201: VGENVRRPYV KCPQKRVDGW MEIELGNFIN DIGDDEDVQA RLMEIKHLHG KGGLIVQGIE FRPE

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.