Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034146 | Potato | cytosol | 48.78 | 48.48 |
| PGSC0003DMT400096249 | Potato | cytosol | 35.98 | 23.05 |
| PGSC0003DMT400083888 | Potato | cytosol | 35.37 | 21.97 |
| PGSC0003DMT400043434 | Potato | cytosol | 34.76 | 21.43 |
| PGSC0003DMT400043441 | Potato | cytosol | 33.54 | 21.07 |
| PGSC0003DMT400031292 | Potato | cytosol | 34.15 | 18.86 |
| PGSC0003DMT400060018 | Potato | cytosol | 31.71 | 16.61 |
| PGSC0003DMT400027718 | Potato | cytosol | 29.88 | 16.33 |
| PGSC0003DMT400063744 | Potato | cytosol | 28.05 | 16.31 |
| PGSC0003DMT400063740 | Potato | cytosol | 28.05 | 16.03 |
| PGSC0003DMT400014139 | Potato | cytosol | 29.88 | 15.51 |
| VIT_05s0051g00080.t01 | Wine grape | cytosol | 24.39 | 15.15 |
| PGSC0003DMT400061566 | Potato | cytosol | 26.22 | 14.63 |
| PGSC0003DMT400097622 | Potato | cytosol, mitochondrion | 19.51 | 14.29 |
| PGSC0003DMT400061562 | Potato | cytosol | 28.05 | 13.98 |
| PGSC0003DMT400054296 | Potato | cytosol | 27.44 | 13.98 |
| PGSC0003DMT400076213 | Potato | cytosol | 19.51 | 13.73 |
| PGSC0003DMT400006947 | Potato | cytosol | 19.51 | 10.7 |
| PGSC0003DMT400028899 | Potato | cytosol | 18.9 | 10.54 |
| PGSC0003DMT400072413 | Potato | cytosol | 17.68 | 9.93 |
| PGSC0003DMT400058590 | Potato | plastid | 16.46 | 9.34 |
| PGSC0003DMT400071397 | Potato | cytosol | 15.85 | 9.03 |
| PGSC0003DMT400010881 | Potato | plastid | 14.63 | 8.3 |
| PGSC0003DMT400026564 | Potato | cytosol | 14.63 | 8.14 |
| PGSC0003DMT400037131 | Potato | cytosol | 12.2 | 6.76 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400034143 | EnsemblPlantsGene:PGSC0003DMG400013115 | InterPro:PP2-like | PANTHER:PTHR32278 | PFAM:PF14299 | PGSC:PGSC0003DMG400013115 |
| UniParc:UPI0002962380 | UniProt:M1B068 | MapMan:35.2 | : | : | : |
Description
Lectin [Source:PGSC_GENE;Acc:PGSC0003DMG400013115]
Coordinates
chr5:+:49046980..49048304
Molecular Weight (calculated)
18833.3 Da
IEP (calculated)
4.658
GRAVY (calculated)
-0.391
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKWIDAKDL IIAFVDDWTW TSLDDSGIEV AELVRTCWLD ISTTIDTKQL TKKTSFTSYL VFKLKEDSHG LEKAIGSVRL LKQEINGHEG YNVYFSNELE
101: GKTIGRFPHR WSDNDSDEWM EIKLGEFYNN LGNYGEIEIS LMNTKDVFTP KSGLIVKGIE IRPT
101: GKTIGRFPHR WSDNDSDEWM EIKLGEFYNN LGNYGEIEIS LMNTKDVFTP KSGLIVKGIE IRPT
001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
Arabidopsis Description
PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.