Factsheet for PGSC0003DMT400014139

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	62.03	87.5
Solyc10g051160.1.1	Tomato	cytosol	68.67	80.37
PGSC0003DMT400027718	Potato	cytosol	63.92	67.33
PGSC0003DMT400061566	Potato	cytosol	50.0	53.74
PGSC0003DMT400054296	Potato	cytosol	52.85	51.86
PGSC0003DMT400061562	Potato	cytosol	53.48	51.37
PGSC0003DMT400031292	Potato	cytosol	41.14	43.77
PGSC0003DMT400043441	Potato	cytosol	34.81	42.15
PGSC0003DMT400063744	Potato	cytosol	37.34	41.84
PGSC0003DMT400063740	Potato	cytosol	37.66	41.46
PGSC0003DMT400083888	Potato	cytosol	34.49	41.29
PGSC0003DMT400096249	Potato	cytosol	33.23	41.02
PGSC0003DMT400043434	Potato	cytosol	34.49	40.98
PGSC0003DMT400060018	Potato	cytosol	39.24	39.62
KRH55670	Soybean	cytosol	12.03	38.78
KRH55667	Soybean	cytosol	31.96	38.26
KRH55669	Soybean	cytosol	31.65	37.88
PGSC0003DMT400076213	Potato	cytosol	26.58	36.05
PGSC0003DMT400034143	Potato	cytosol	15.51	29.88
PGSC0003DMT400034146	Potato	cytosol	13.61	26.06
PGSC0003DMT400058590	Potato	plastid	20.89	22.84
PGSC0003DMT400010881	Potato	plastid	19.62	21.45
PGSC0003DMT400037131	Potato	cytosol	19.62	20.95
PGSC0003DMT400028899	Potato	cytosol	19.3	20.75
PGSC0003DMT400006947	Potato	cytosol	19.3	20.4
PGSC0003DMT400072413	Potato	cytosol	18.35	19.86
PGSC0003DMT400071397	Potato	cytosol	18.04	19.79
PGSC0003DMT400026564	Potato	cytosol	17.41	18.64

Protein Annotations

EnsemblPlants:PGSC0003DMT400014139	EnsemblPlantsGene:PGSC0003DMG400005548	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6	PFAM:PF00646
PFAM:PF14299	PGSC:PGSC0003DMG400005548	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000294F866
UniProt:M1A3S6	MapMan:35.1	:	:	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005548]

Coordinates

chr10:+:43857073..43858275

Molecular Weight (calculated)

36099.2 Da

IEP (calculated)

4.696

GRAVY (calculated)

-0.294

Length

316 amino acids

Sequence
(BLAST)

001: MLLNDCTAEI LALTSPLDVC RISLVSKSLK SAADSDSVWE RFLPSDYQSI ISASLTPVPE FASKKDLYVY LCHHPLLIDA GRKNFSLEKR TGKKCYFVGA
101: RDLDIPLVDR PSYWKWTSLP ESRFPEVAEL KRVWSVDIGG TIRAGVLSPR TSYVAYLVYM FGDEFGFSYR PSEVSVGVSG VKFDKRFAIL MPEDEESIYN
201: LPPDLEDRLK KVYEEAVRSN LPSDAEDDDP GLRDDIYLAL QHLPLQLLPE NVSNRLQLVM RRPKLRDDGW FEIELGEFYT ENEDDRIEMN LKELKKCASL
301: KAGLIIEGIE IRPRMD

Best Arabidopsis Sequence Match ( AT1G56240.1 )
(BLAST)

001: MMMLPEACVA NILAFTSPAD AFSSSEVSSV FRLAGDSDFV WEKFLPSHYK SLISQSTDHH RIFSSKKEIY RCLCDSLLID NARKLFKINK FSGKISYILS
101: ARDISITYSD HASYCSWSNV SDSRFSESAE LITTDRLEIK GKIQTTVLSP NTKYGAYLIM KVTNGAYGLD LVPAETSVKS KNGQNNKNTT YLCCLDEKKQ
201: QMKRLFYGNR EERMAMTVEA VGGDGKRREP KARDDGWLEI ELGEFVTREG EDDEVNMSLT EVKGYQLKGG IVIDGIEVRP IPLK

Arabidopsis Description

PP2B13F-box protein PP2-B13 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7J9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.