Factsheet for PGSC0003DMT400043434

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 2
cytosol 3
plasma membrane 2
plastid 1
endoplasmic reticulum 1
vacuole 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	extracellular
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g098200.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular	94.74	94.74
PGSC0003DMT400083888	Potato	cytosol	82.33	82.95
PGSC0003DMT400043441	Potato	cytosol	66.92	68.2
PGSC0003DMT400096249	Potato	cytosol	58.65	60.94
PGSC0003DMT400076213	Potato	cytosol	44.74	51.07
PGSC0003DMT400063740	Potato	cytosol	44.36	41.12
PGSC0003DMT400031292	Potato	cytosol	44.36	39.73
PGSC0003DMT400027718	Potato	cytosol	44.36	39.33
PGSC0003DMT400061566	Potato	cytosol	42.86	38.78
VIT_05s0051g00080.t01	Wine grape	cytosol	37.97	38.26
PGSC0003DMT400060018	Potato	cytosol	44.74	38.02
PGSC0003DMT400063744	Potato	cytosol	38.72	36.52
PGSC0003DMT400054296	Potato	cytosol	43.23	35.71
PGSC0003DMT400034143	Potato	cytosol	21.43	34.76
PGSC0003DMT400034146	Potato	cytosol	21.43	34.55
PGSC0003DMT400014139	Potato	cytosol	40.98	34.49
PGSC0003DMT400061562	Potato	cytosol	42.48	34.35
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	28.2	33.48
PGSC0003DMT400071397	Potato	cytosol	26.69	24.65
PGSC0003DMT400058590	Potato	plastid	26.32	24.22
PGSC0003DMT400010881	Potato	plastid	25.56	23.53
PGSC0003DMT400028899	Potato	cytosol	24.81	22.45
PGSC0003DMT400026564	Potato	cytosol	24.81	22.37
PGSC0003DMT400006947	Potato	cytosol	23.68	21.07
PGSC0003DMT400037131	Potato	cytosol	23.31	20.95
PGSC0003DMT400072413	Potato	cytosol	22.18	20.21

Protein Annotations

EnsemblPlants:PGSC0003DMT400043434	EnsemblPlantsGene:PGSC0003DMG400016861	EntrezGene:107061040	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2
PFAM:PF00646	PFAM:PF14299	PGSC:PGSC0003DMG400016861	RefSeq:XP_015165222.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0002949E78	UniProt:M1BEM0	MapMan:35.1	:	:

Description

F-box protein PP2-B10 [Source:PGSC_GENE;Acc:PGSC0003DMG400016861]

Coordinates

chr12:-:59039183..59041123

Molecular Weight (calculated)

30426.6 Da

IEP (calculated)

8.581

GRAVY (calculated)

-0.227

Length

266 amino acids

Sequence
(BLAST)

001: MDYFLLLPEG CVCDILSFTS PKDVVISSAI SRGFNSAAES DVIWVKFLPD DYEDIISRYV SPRIYPSKKE LYFSLCDFPV LMDGGKLSFS LDKKTGKKCF
101: MISARELAIS WGVDTPWYWE WISHPDSRFS EVAHLKGVSW LDIRGTIGTQ ILSKRTKYVV YLVFKLAKDH DGLEIANAFV RFVNRVSDKD AEERASVVSL
201: VGKRVRRRKR NVKRPRKRVD GWMEIELGNF INDTGDDGDV EARLMEITRL HGKGGLIVQG IEFRPE

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.