Factsheet for Solyc12g098200.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
extracellular 2
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum, extracellular
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043434	Potato	cytosol	94.74	94.74
Solyc12g044930.1.1	Tomato	cytosol	77.07	78.24
Solyc12g098190.1.1	Tomato	cytosol	65.41	66.67
Solyc12g096890.1.1	Tomato	cytosol	37.97	63.12
Solyc04g056680.1.1	Tomato	cytosol	39.1	58.43
Solyc04g050990.2.1	Tomato	cytosol	43.98	39.39
Solyc01g100010.2.1	Tomato	cytosol	39.47	37.77
Solyc11g006740.1.1	Tomato	cytosol	26.32	37.63
Solyc01g099990.2.1	Tomato	cytosol	40.6	37.24
Solyc01g100000.2.1	Tomato	cytosol	37.22	36.53
Solyc05g055870.2.1	Tomato	cytosol	41.73	36.04
VIT_05s0051g00080.t01	Wine grape	cytosol	35.71	35.98
Solyc05g053620.2.1	Tomato	cytosol	21.8	35.15
Solyc10g051160.1.1	Tomato	cytosol	30.83	30.37
Solyc08g080360.2.1	Tomato	plastid	25.56	23.53
Solyc01g091700.2.1	Tomato	cytosol	25.19	23.34
Solyc12g056410.1.1	Tomato	cytosol, plastid	24.81	22.84
Solyc10g017960.1.1	Tomato	cytosol	23.68	21.58
Solyc10g085490.1.1	Tomato	cytosol	23.31	20.74
Solyc09g008820.2.1	Tomato	cytosol	21.8	19.4
Solyc10g083730.1.1	Tomato	cytosol	21.05	18.73
Solyc03g026160.2.1	Tomato	cytosol, extracellular	9.77	17.11

Protein Annotations

EnsemblPlants:Solyc12g098200.1.1	EnsemblPlantsGene:Solyc12g098200.1	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2
PFAM:PF00646	PFAM:PF14299	SEG:seg	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000276A063
UniProt:K4DHJ4	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr12:-:65814904..65816656

Molecular Weight (calculated)

30369.5 Da

IEP (calculated)

7.803

GRAVY (calculated)

-0.224

Length

266 amino acids

Sequence
(BLAST)

001: MDYFLLLPEG CVCDILSFTS PKDVVIASAI SRGFNSVAEF DVIWENFLPD DYEDINSRYV SPRISPSKRQ LYFSLCDFPV LMDGGKLSFS LDKKTGKKCF
101: MISARELAIS WGVDTPWYWE WISHPDSRFS EVAHLKGVSW LDIRGTIGTQ ILSKRTKYVV YLVFKLAKDH DGLEIANACI RFVNRVSDKE AEERASVVSL
201: VGKRVRRRKC NVKRPRKRVD GWMEIELGNF INDTGDDGDV EARLMEITRL HGKGGLIVQG IEFKPE

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.