Factsheet for Solyc12g056410.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010881	Potato	plastid	96.89	96.89
Solyc08g080360.2.1	Tomato	plastid	74.74	74.74
KRH03980	Soybean	cytosol, plastid	63.32	63.99
CDY57080	Canola	cytosol	60.55	62.06
Bra019781.1-P	Field mustard	cytosol	60.9	61.32
CDX98047	Canola	cytosol	60.55	60.98
VIT_02s0025g04380.t01	Wine grape	cytosol	64.71	60.52
HORVU1Hr1G048690.1	Barley	peroxisome	35.29	60.0
GSMUA_Achr4P27200_001	Banana	cytosol	58.82	59.23
HORVU2Hr1G094960.4	Barley	cytosol	40.48	59.09
GSMUA_Achr5P03300_001	Banana	cytosol	57.79	57.39
Solyc03g026160.2.1	Tomato	cytosol, extracellular	30.1	57.24
CDY16361	Canola	extracellular	37.72	56.77
CDY63226	Canola	plastid	56.75	56.55
CDY47354	Canola	cytosol	56.4	56.21
CDY45973	Canola	cytosol	56.4	56.21
GSMUA_Achr1P03900_001	Banana	cytosol	56.75	56.16
CDY49201	Canola	cytosol	56.06	55.86
Bra027000.1-P	Field mustard	cytosol	56.06	55.86
Bra027618.1-P	Field mustard	cytosol	56.06	55.86
AT1G63090.1	Thale cress	cytosol	55.71	55.71
GSMUA_Achr11P...	Banana	cytosol	54.67	55.24
Os02t0675800-01	Rice	cytosol	56.75	55.22
Zm00001d029673_P001	Maize	plasma membrane	56.4	55.07
GSMUA_Achr4P24870_001	Banana	cytosol	57.44	54.79
EER94629	Sorghum	plasma membrane	56.75	54.49
Solyc10g017960.1.1	Tomato	cytosol	55.02	54.45
EER95641	Sorghum	cytosol	55.36	54.42
Os09t0525300-01	Rice	cytosol	52.6	54.09
TraesCS5A01G312700.1	Wheat	cytosol	53.63	54.01
TraesCS1D01G187700.1	Wheat	cytosol, plasma membrane	55.71	53.67
TraesCS5D01G319500.1	Wheat	cytosol	53.29	53.66
Solyc01g091700.2.1	Tomato	cytosol	53.29	53.66
TraesCS5B01G313700.1	Wheat	cytosol	53.29	53.47
TraesCS1B01G196400.1	Wheat	cytosol, plasma membrane	55.36	53.33
HORVU1Hr1G048700.4	Barley	cytosol, nucleus, plasma membrane	55.71	53.31
HORVU5Hr1G080530.1	Barley	cytosol	52.94	53.31
GSMUA_Achr3P12400_001	Banana	cytosol	52.94	53.12
KRH57251	Soybean	plastid	62.63	53.08
Os03t0116700-01	Rice	cytosol, extracellular	54.33	52.86
GSMUA_Achr7P05860_001	Banana	cytosol	52.94	52.76
Zm00001d021224_P001	Maize	cytosol	53.98	52.7
TraesCS6B01G269300.1	Wheat	cytosol	54.33	52.68
TraesCS6D01G237300.1	Wheat	cytosol	54.33	52.68
TraesCS6A01G256100.1	Wheat	cytosol	54.33	52.68
Zm00001d027361_P001	Maize	cytosol	54.33	52.68
TraesCS1A01G188700.1	Wheat	plasma membrane	55.36	52.63
EER99217	Sorghum	cytosol	54.33	52.51
KXG31015	Sorghum	cytosol	54.33	52.16
TraesCS2D01G397700.1	Wheat	cytosol	53.63	52.01
TraesCS2A01G400100.1	Wheat	cytosol	53.63	52.01
AT1G12710.2	Thale cress	cytosol	59.52	51.65
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	54.33	51.64
Zm00001d051447_P002	Maize	cytosol	52.25	51.01
TraesCS2B01G418200.2	Wheat	cytosol	53.29	50.83
TraesCS4B01G356300.1	Wheat	cytosol	52.94	49.84
TraesCS4D01G350000.1	Wheat	cytosol	52.25	49.19
TraesCS5A01G525700.1	Wheat	cytosol	51.9	49.02
Solyc10g085490.1.1	Tomato	cytosol	50.52	48.83
GSMUA_Achr11P...	Banana	cytosol	30.45	48.62
EES11284	Sorghum	cytosol	52.25	48.24
Solyc10g083730.1.1	Tomato	cytosol	49.48	47.83
Solyc09g008820.2.1	Tomato	cytosol	48.79	47.16
Os10t0522400-01	Rice	cytosol	26.3	46.06
Zm00001d026078_P001	Maize	cytosol	45.67	45.67
HORVU4Hr1G086110.1	Barley	cytosol	23.18	44.08
Zm00001d024256_P001	Maize	cytosol, mitochondrion	35.64	41.37
Zm00001d035636_P001	Maize	plastid	33.91	37.55
Zm00001d021854_P001	Maize	cytosol	11.42	37.5
Os02t0224900-01	Rice	endoplasmic reticulum, extracellular	28.37	34.6
HORVU2Hr1G049730.1	Barley	cytosol	18.69	31.76
HORVU5Hr1G055050.1	Barley	mitochondrion	18.34	31.18
Solyc12g044930.1.1	Tomato	cytosol	22.84	25.19
Solyc12g098200.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular	22.84	24.81
Solyc12g098190.1.1	Tomato	cytosol	21.45	23.75
Solyc01g100000.2.1	Tomato	cytosol	22.15	23.62
Solyc11g006740.1.1	Tomato	cytosol	14.88	23.12
Solyc05g055870.2.1	Tomato	cytosol	24.57	23.05
Solyc01g100010.2.1	Tomato	cytosol	22.15	23.02
Solyc04g050990.2.1	Tomato	cytosol	22.49	21.89
Solyc01g099990.2.1	Tomato	cytosol	21.8	21.72
Solyc04g056680.1.1	Tomato	cytosol	12.8	20.79
Solyc10g051160.1.1	Tomato	cytosol	19.03	20.37
Solyc12g096890.1.1	Tomato	cytosol	10.38	18.75
Solyc05g053620.2.1	Tomato	cytosol	9.69	16.97

Protein Annotations

EnsemblPlants:Solyc12g056410.1.1	EnsemblPlantsGene:Solyc12g056410.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960	PANTHER:PTHR31960:SF2	PFAM:PF14299
PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI0002769EB6	UniProt:K4DFX2	MapMan:19.2.2.8.1.4.6	:

Description

No Description!

Coordinates

chr12:+:62341793..62343776

Molecular Weight (calculated)

32484.6 Da

IEP (calculated)

8.399

GRAVY (calculated)

-0.266

Length

289 amino acids

Sequence
(BLAST)

001: MGSSLSFFLN PRGSVDVPPA NPGLGDLPES CVASVMVYLN PSEICSLSVL SRGFRAASSA DFVWESKLPI NYELLIDRVF GGVDDFSNNL CKRDIYARLC
101: RPSYFDDGLK KVWLDKGTGR VCLSISANGL AITGIDDRRY WSRIETDESR FQSIAYLQQI WWVEVGGEVD FPFPAGSYSI FYRLQVGRSS RRFGRRICNS
201: EHVHGWDKKP VQFQLSTSDG QQATTQCYMK EPGKWKYHHV GDFTVTGSAA NTKVKFSMTQ IDCTHTKGGL CVDSVLICPS EFTKRLKRF

Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)

001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ

Arabidopsis Description

AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.