Factsheet for TraesCS4B01G356300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G350000.1	Wheat	cytosol	97.39	97.39
TraesCS5A01G525700.1	Wheat	cytosol	92.83	93.14
Os03t0116700-01	Rice	cytosol, extracellular	71.34	73.74
EER95641	Sorghum	cytosol	69.71	72.79
Zm00001d027361_P001	Maize	cytosol	68.73	70.81
TraesCS1B01G196400.1	Wheat	cytosol, plasma membrane	68.4	70.0
VIT_16s0100g00520.t01	Wine grape	cytosol	54.4	59.86
TraesCS6B01G269300.1	Wheat	cytosol	55.37	57.05
VIT_15s0048g01930.t01	Wine grape	cytosol	53.42	56.75
TraesCS2B01G418200.2	Wheat	cytosol	55.7	56.44
CDY16361	Canola	extracellular	35.18	56.25
KRG91447	Soybean	cytosol, plastid	52.77	55.29
KRH65151	Soybean	cytosol	50.49	55.16
Solyc08g080360.2.1	Tomato	plastid	51.79	55.02
PGSC0003DMT400058590	Potato	plastid	51.47	54.67
AT3G61060.2	Thale cress	cytosol	51.79	54.64
TraesCS5B01G313700.1	Wheat	cytosol	51.14	54.51
KRH48244	Soybean	cytosol	49.84	54.45
KRH35368	Soybean	cytosol	52.77	54.36
Bra014456.1-P	Field mustard	cytosol	50.49	54.2
CDX89095	Canola	cytosol	50.49	54.2
KRH03980	Soybean	cytosol, plastid	50.49	54.2
VIT_02s0025g04380.t01	Wine grape	cytosol	54.4	54.05
CDY42484	Canola	cytosol	50.16	54.04
PGSC0003DMT400010881	Potato	plastid	50.49	53.63
CDY57080	Canola	cytosol	48.86	53.19
Solyc12g056410.1.1	Tomato	cytosol, plastid	49.84	52.94
Bra019781.1-P	Field mustard	cytosol	48.86	52.26
CDY63226	Canola	plastid	49.19	52.07
CDY45973	Canola	cytosol	49.19	52.07
Bra027000.1-P	Field mustard	cytosol	49.19	52.07
CDX98047	Canola	cytosol	48.53	51.92
AT1G63090.1	Thale cress	cytosol	48.53	51.56
KRH09123	Soybean	cytosol	48.53	51.56
CDY47354	Canola	cytosol	48.53	51.38
Solyc03g026160.2.1	Tomato	cytosol, extracellular	25.41	51.32
CDY49201	Canola	cytosol	48.21	51.03
Bra027618.1-P	Field mustard	cytosol	48.21	51.03
CDY38901	Canola	cytosol	45.93	50.72
KRH38594	Soybean	cytosol	47.56	50.52
CDY32595	Canola	cytosol	47.23	50.17
AT5G52120.1	Thale cress	cytosol	46.91	49.48
Bra029137.1-P	Field mustard	cytosol	46.58	49.31
Solyc10g017960.1.1	Tomato	cytosol	46.25	48.63
PGSC0003DMT400071397	Potato	cytosol	45.6	48.61
Solyc01g091700.2.1	Tomato	cytosol	45.28	48.43
PGSC0003DMT400026564	Potato	cytosol	45.28	47.12
PGSC0003DMT400037131	Potato	cytosol	44.95	46.62
KRH57251	Soybean	plastid	51.14	46.04
AT1G12710.2	Thale cress	cytosol	48.86	45.05
TraesCS4B01G262300.1	Wheat	cytosol	21.82	25.38
TraesCS7B01G205100.1	Wheat	cytosol	22.8	23.57
TraesCS3B01G094500.1	Wheat	cytosol	23.45	23.53
TraesCS5B01G558800.1	Wheat	nucleus	22.48	23.47
TraesCS6B01G423500.1	Wheat	cytosol	22.48	23.23
TraesCS6B01G423200.1	Wheat	cytosol	22.15	22.52
TraesCS3B01G018900.1	Wheat	cytosol	21.5	22.0
TraesCS5B01G559800.1	Wheat	cytosol	21.5	21.85
TraesCS6B01G423400.1	Wheat	cytosol	22.15	21.66
TraesCS6B01G421100.1	Wheat	cytosol	22.15	21.52
TraesCS6B01G422400.1	Wheat	cytosol	20.85	21.48
TraesCS5B01G560100.1	Wheat	cytosol	21.82	21.41
TraesCS5B01G560000.1	Wheat	cytosol	21.82	21.34
TraesCS6B01G422300.1	Wheat	cytosol	20.2	20.95
TraesCS5B01G558600.1	Wheat	cytosol	17.59	19.71
TraesCS7B01G449100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.22	19.16
TraesCS7B01G448100.1	Wheat	cytosol, extracellular	18.24	17.78
TraesCS3B01G097600.1	Wheat	cytosol	14.01	15.52
TraesCS6B01G422200.1	Wheat	mitochondrion	10.1	12.86

Protein Annotations

EnsemblPlants:TraesCS4B01G356300.1	EnsemblPlantsGene:TraesCS4B01G356300	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:PP2-like	PANTHER:PTHR31960	PANTHER:PTHR31960:SF10	PFAM:PF14299	SEG:seg	SUPFAM:SSF81383
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:-:646922650..646924820

Molecular Weight (calculated)

33748.0 Da

IEP (calculated)

8.131

GRAVY (calculated)

-0.343

Length

307 amino acids

Sequence
(BLAST)

001: MGAGASDLAA PAEAPGSGLG DMPELCAAEV LLRLGAPDIC RLARLNRAFR SAAAADFVWE AKLPENYGYL MGFVRGSGGE DVEGGGKRSA LGKKEVYARL
101: AKAVRFDDGK REFWLEKSTG MVCMALSSKS LVITGIDDRR YWVHMPNTES RFQSVAYLQQ IWWFEVVGEI DFRFPAGTYS LYFRLHLGKP SSSRHAGRRG
201: CGSEKNAGSG IHGWDRKPVR FQLSTSDGQN AVSQRYLDDE PGSWALYHAG DFVVAPDTEE HGHGRPVRVK FSMAQIDCTH TKGGLCVDSV LVYPRGFRTE
301: RVVDAQT

Best Arabidopsis Sequence Match ( AT1G12710.1 )
(BLAST)

001: MGVAHSDLHN DLSSSSCFGD RNILKPGLGD LPEACVAIIV ENLDPVEICR FSKLNRAFRG ASWADCVWES KLPQNYRDVL EKILGGFPEN LQKRHLYAFL
101: SRINSFDDAT KKVWIDKRTS GVCLSISAKG LSITGIDDRR YWSHIPTDES RFSSVAYLQQ IWWFEVDGEI DFPFPVGTYS IFFRLQLGRS GKWFGRRVCN
201: TEQVHGWDIK PVRFQLWTED GQYSSSQCML TERGNWIHYH AGDVVVRESN RSSTKIKFSM TQIDCTHTKG GLSLDSVVVY PSSCKDQLKR F

Arabidopsis Description

AtPP2-A12phloem protein 2-A12 [Source:TAIR;Acc:AT1G12710]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.