Factsheet for Os03t0116700-01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 24083427

msms PMID: 24083427 doi

T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu

Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95641	Sorghum	cytosol	82.49	83.33
Zm00001d027361_P001	Maize	cytosol	79.12	78.86
TraesCS4B01G356300.1	Wheat	cytosol	73.74	71.34
TraesCS4D01G350000.1	Wheat	cytosol	72.73	70.36
TraesCS5A01G525700.1	Wheat	cytosol	72.39	70.26
Os10t0522400-01	Rice	cytosol	38.38	69.09
VIT_16s0100g00520.t01	Wine grape	cytosol	57.24	60.93
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	62.29	60.86
VIT_15s0048g01930.t01	Wine grape	cytosol	58.92	60.55
Os02t0675800-01	Rice	cytosol	60.27	60.27
KRG91447	Soybean	cytosol, plastid	58.92	59.73
Os09t0525300-01	Rice	cytosol	55.89	59.07
PGSC0003DMT400058590	Potato	plastid	56.9	58.48
Solyc08g080360.2.1	Tomato	plastid	56.9	58.48
KRH35368	Soybean	cytosol	58.59	58.39
Solyc03g026160.2.1	Tomato	cytosol, extracellular	29.63	57.89
CDY16361	Canola	extracellular	37.04	57.29
VIT_02s0025g04380.t01	Wine grape	cytosol	59.6	57.28
AT3G61060.2	Thale cress	cytosol	55.89	57.04
KRH03980	Soybean	cytosol, plastid	54.88	56.99
KRH09123	Soybean	cytosol	55.22	56.75
KRH48244	Soybean	cytosol	53.54	56.58
CDY42484	Canola	cytosol	54.21	56.49
Bra014456.1-P	Field mustard	cytosol	54.21	56.29
CDX89095	Canola	cytosol	54.21	56.29
KRH65151	Soybean	cytosol	53.2	56.23
KRH38594	Soybean	cytosol	54.55	56.06
CDY57080	Canola	cytosol	52.86	55.67
PGSC0003DMT400010881	Potato	plastid	53.87	55.36
Bra019781.1-P	Field mustard	cytosol	52.53	54.36
Solyc12g056410.1.1	Tomato	cytosol, plastid	52.86	54.33
CDX98047	Canola	cytosol	52.19	54.01
PGSC0003DMT400071397	Potato	cytosol	51.85	53.47
Bra027000.1-P	Field mustard	cytosol	52.19	53.45
CDY45973	Canola	cytosol	51.85	53.1
CDY63226	Canola	plastid	51.85	53.1
Solyc01g091700.2.1	Tomato	cytosol	51.18	52.96
AT1G63090.1	Thale cress	cytosol	51.18	52.6
CDY47354	Canola	cytosol	51.18	52.41
Solyc10g017960.1.1	Tomato	cytosol	51.52	52.4
Bra027618.1-P	Field mustard	cytosol	50.84	52.07
CDY49201	Canola	cytosol	50.84	52.07
PGSC0003DMT400026564	Potato	cytosol	50.84	51.19
CDY38901	Canola	cytosol	46.8	50.0
PGSC0003DMT400037131	Potato	cytosol	49.49	49.66
CDY32595	Canola	cytosol	47.81	49.13
Bra029137.1-P	Field mustard	cytosol	47.14	48.28
AT5G52120.1	Thale cress	cytosol	46.8	47.77
KRH57251	Soybean	plastid	54.55	47.51
AT1G12710.2	Thale cress	cytosol	52.19	46.55
Os02t0224900-01	Rice	endoplasmic reticulum, extracellular	34.68	43.46
Os04t0280500-00	Rice	cytosol	13.8	27.15
Os02t0813000-00	Rice	cytosol	18.86	24.35
Os12t0131400-01	Rice	nucleus	23.57	23.18
Os08t0150700-01	Rice	cytosol	23.23	23.08
Os02t0813350-01	Rice	cytosol	22.9	22.9
Os02t0812500-01	Rice	cytosol	22.22	19.88
Os02t0813166-00	Rice	cytosol, plastid	17.51	19.85
Os02t0813083-00	Rice	extracellular	6.73	17.54
Os12t0129700-01	Rice	cytosol	21.21	16.89
Os02t0812600-00	Rice	extracellular	22.9	14.91

Protein Annotations

MapMan:19.2.2.8.1.4.6	EntrezGene:4331405	ProteinID:ABF93654.1	EMBL:AK106276	ProteinID:BAF10676.1	ProteinID:BAS81983.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
EnsemblPlantsGene:Os03g0116700	EnsemblPlants:Os03t0116700-01	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR31960
PANTHER:PTHR31960:SF10	UniProt:Q10SN2	SUPFAM:SSF81383	UniParc:UPI0000DB4834	RefSeq:XP_015631987.1	SEG:seg

Description

F-box protein 127Cyclin-like F-box domain containing protein. (Os03t0116700-01)

Coordinates

chr3:+:942736..944993

Molecular Weight (calculated)

32624.1 Da

IEP (calculated)

7.471

GRAVY (calculated)

-0.121

Length

297 amino acids

Sequence
(BLAST)

001: MGAGVSDLAA GMEAVGKVAG GAGLGELPEL CAAEVLLHLD APEICRLARL NRAFRGAAAA DFVWEAKLPE NYGYLLDFVD GAMEGGGGGR ERSVMGKKEV
101: YARLAKAVPF DGGKKELWLE KSKGGVCIAL SSKSLVITGI DDRRYWSHMP TTESRFHSVA YLQQIWWFEV VGELEFCFPA GTYSLYFRLH LGKASTRFGR
201: RVCSSEQIHG WDKKPVRFQL STSDGQHALS QCYLDEPGSW ILYHVGDFVA STTEQPIKLK FSLAQIDCTH TKGGLCVDSV LIYPKGFQQE KVISSQK

Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)

001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ

Arabidopsis Description

AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.