Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g026160.2.1 | Tomato | cytosol, extracellular | 45.27 | 88.16 |
| VIT_16s0100g00520.t01 | Wine grape | cytosol | 54.39 | 57.71 |
| HORVU1Hr1G048690.1 | Barley | peroxisome | 32.09 | 55.88 |
| HORVU2Hr1G094960.4 | Barley | cytosol | 35.81 | 53.54 |
| GSMUA_Achr4P27200_001 | Banana | cytosol | 51.69 | 53.31 |
| GSMUA_Achr5P03300_001 | Banana | cytosol | 52.36 | 53.26 |
| GSMUA_Achr1P03900_001 | Banana | cytosol | 52.03 | 52.74 |
| GSMUA_Achr11P... | Banana | cytosol | 50.0 | 51.75 |
| Os04t0571300-01 | Rice | cytosol, mitochondrion, peroxisome | 53.04 | 51.64 |
| GSMUA_Achr7P05860_001 | Banana | cytosol | 50.34 | 51.38 |
| Os02t0675800-01 | Rice | cytosol | 51.35 | 51.18 |
| CDY38901 | Canola | cytosol | 47.64 | 50.72 |
| PGSC0003DMT400010881 | Potato | plastid | 49.32 | 50.52 |
| KRH09123 | Soybean | cytosol | 49.32 | 50.52 |
| KRG91447 | Soybean | cytosol, plastid | 50.0 | 50.51 |
| EER95641 | Sorghum | cytosol | 50.0 | 50.34 |
| Os09t0525300-01 | Rice | cytosol | 47.64 | 50.18 |
| KRH38594 | Soybean | cytosol | 48.99 | 50.17 |
| Zm00001d027361_P001 | Maize | cytosol | 50.34 | 50.0 |
| Zm00001d029673_P001 | Maize | plasma membrane | 50.0 | 50.0 |
| KRH35368 | Soybean | cytosol | 50.34 | 50.0 |
| CDY32595 | Canola | cytosol | 48.65 | 49.83 |
| PGSC0003DMT400058590 | Potato | plastid | 48.65 | 49.83 |
| Os03t0116700-01 | Rice | cytosol, extracellular | 49.66 | 49.49 |
| PGSC0003DMT400071397 | Potato | cytosol | 47.97 | 49.31 |
| GSMUA_Achr4P24870_001 | Banana | cytosol | 50.34 | 49.17 |
| AT5G52120.1 | Thale cress | cytosol | 48.31 | 49.14 |
| TraesCS2D01G397700.1 | Wheat | cytosol | 49.32 | 48.99 |
| Bra029137.1-P | Field mustard | cytosol | 47.97 | 48.97 |
| GSMUA_Achr3P12400_001 | Banana | cytosol | 47.64 | 48.96 |
| KXG31015 | Sorghum | cytosol | 49.66 | 48.84 |
| PGSC0003DMT400026564 | Potato | cytosol | 48.65 | 48.81 |
| TraesCS2A01G400100.1 | Wheat | cytosol | 48.99 | 48.66 |
| TraesCS6A01G256100.1 | Wheat | cytosol | 48.99 | 48.66 |
| TraesCS6B01G269300.1 | Wheat | cytosol | 48.99 | 48.66 |
| TraesCS6D01G237300.1 | Wheat | cytosol | 48.99 | 48.66 |
| Zm00001d021224_P001 | Maize | cytosol | 48.65 | 48.65 |
| Zm00001d051447_P002 | Maize | cytosol | 48.31 | 48.31 |
| EER94629 | Sorghum | plasma membrane | 48.99 | 48.17 |
| TraesCS5D01G319500.1 | Wheat | cytosol | 46.62 | 48.08 |
| TraesCS5A01G312700.1 | Wheat | cytosol | 46.62 | 48.08 |
| TraesCS5B01G313700.1 | Wheat | cytosol | 46.62 | 47.92 |
| TraesCS2B01G418200.2 | Wheat | cytosol | 48.65 | 47.52 |
| GSMUA_Achr11P... | Banana | cytosol | 29.05 | 47.51 |
| TraesCS1B01G196400.1 | Wheat | cytosol, plasma membrane | 47.97 | 47.33 |
| TraesCS1D01G187700.1 | Wheat | cytosol, plasma membrane | 47.97 | 47.33 |
| HORVU5Hr1G080530.1 | Barley | cytosol | 45.61 | 47.04 |
| HORVU1Hr1G048700.4 | Barley | cytosol, nucleus, plasma membrane | 47.97 | 47.02 |
| EER99217 | Sorghum | cytosol | 47.3 | 46.82 |
| TraesCS1A01G188700.1 | Wheat | plasma membrane | 47.97 | 46.71 |
| EES11284 | Sorghum | cytosol | 47.97 | 45.37 |
| TraesCS4B01G356300.1 | Wheat | cytosol | 46.62 | 44.95 |
| PGSC0003DMT400028899 | Potato | cytosol | 44.26 | 44.56 |
| TraesCS5A01G525700.1 | Wheat | cytosol | 45.95 | 44.44 |
| TraesCS4D01G350000.1 | Wheat | cytosol | 45.61 | 43.97 |
| PGSC0003DMT400006947 | Potato | cytosol | 44.26 | 43.81 |
| Zm00001d026078_P001 | Maize | cytosol | 41.55 | 42.56 |
| PGSC0003DMT400072413 | Potato | cytosol | 41.55 | 42.12 |
| HORVU4Hr1G086110.1 | Barley | cytosol | 20.27 | 39.47 |
| Os10t0522400-01 | Rice | cytosol | 21.62 | 38.79 |
| Zm00001d024256_P001 | Maize | cytosol, mitochondrion | 31.42 | 37.35 |
| Zm00001d021854_P001 | Maize | cytosol | 10.47 | 35.23 |
| Zm00001d035636_P001 | Maize | plastid | 29.73 | 33.72 |
| Os02t0224900-01 | Rice | endoplasmic reticulum, extracellular | 24.32 | 30.38 |
| HORVU5Hr1G055050.1 | Barley | mitochondrion | 17.23 | 30.0 |
| HORVU2Hr1G049730.1 | Barley | cytosol | 16.55 | 28.82 |
| PGSC0003DMT400083888 | Potato | cytosol | 21.28 | 23.86 |
| PGSC0003DMT400043434 | Potato | cytosol | 20.95 | 23.31 |
| PGSC0003DMT400027718 | Potato | cytosol | 22.97 | 22.67 |
| PGSC0003DMT400063744 | Potato | cytosol | 21.28 | 22.34 |
| PGSC0003DMT400063740 | Potato | cytosol | 20.95 | 21.6 |
| PGSC0003DMT400096249 | Potato | cytosol | 18.58 | 21.48 |
| PGSC0003DMT400061566 | Potato | cytosol | 21.28 | 21.43 |
| PGSC0003DMT400060018 | Potato | cytosol | 22.3 | 21.09 |
| PGSC0003DMT400076213 | Potato | cytosol | 16.55 | 21.03 |
| PGSC0003DMT400043441 | Potato | cytosol | 18.24 | 20.69 |
| PGSC0003DMT400014139 | Potato | cytosol | 20.95 | 19.62 |
| PGSC0003DMT400054296 | Potato | cytosol | 20.95 | 19.25 |
| PGSC0003DMT400031292 | Potato | cytosol | 19.26 | 19.19 |
| PGSC0003DMT400097622 | Potato | cytosol, mitochondrion | 13.85 | 18.3 |
| PGSC0003DMT400061562 | Potato | cytosol | 20.27 | 18.24 |
| PGSC0003DMT400034146 | Potato | cytosol | 7.77 | 13.94 |
| PGSC0003DMT400034143 | Potato | cytosol | 6.76 | 12.2 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400037131 | EnsemblPlantsGene:PGSC0003DMG400014315 | EntrezGene:102584191 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:PP2-like | PANTHER:PTHR31960 |
| PANTHER:PTHR31960:SF5 | PFAM:PF00646 | PFAM:PF14299 | PFscan:PS50181 | PGSC:PGSC0003DMG400014315 | RefSeq:XP_006353356.1 |
| SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI00029610BC | UniProt:M1B4V7 | MapMan:19.2.2.8.1.4.6 | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014315]
Coordinates
chr3:-:42273354..42277124
Molecular Weight (calculated)
33806.5 Da
IEP (calculated)
8.096
GRAVY (calculated)
-0.222
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MGATISGLVD HEKLTSSNIG PLETGLGDLP ENCIALVLTH LDPIEICKIS RVSRTFHQAS LTDLVWDTKL PQNYQILLRN YKNLWSNASE DSCSLTKKEI
101: FVRLCRPNHF GSSNYKAFWM EKNGGICVCI SWKEMKITGI EDRRYWTHVS SDESRFNTFA FLKQIWWVEV EGNLEFEFPA GNYSVFFRLQ LGKTSRRLGR
201: RICTVDQVHG WNIKPVQFQL STSNGQQASA QYYLNEAGKW INYYVGDFVV DSMTTKLKFS MTQIDCTHTK GGLCLDSVLI IPAHIGPKYV NFLNCT
101: FVRLCRPNHF GSSNYKAFWM EKNGGICVCI SWKEMKITGI EDRRYWTHVS SDESRFNTFA FLKQIWWVEV EGNLEFEFPA GNYSVFFRLQ LGKTSRRLGR
201: RICTVDQVHG WNIKPVQFQL STSNGQQASA QYYLNEAGKW INYYVGDFVV DSMTTKLKFS MTQIDCTHTK GGLCLDSVLI IPAHIGPKYV NFLNCT
001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKQ ELWIDKNTGR LCLSISSKAL RITGIDDRRY WSHIPTDESR FQSAAYVQQI WWFEVGGEFE IQFPSGTYSL FFRIQLGKTS KRLGRRICNS
201: EHIHGWDIKP VRFQLATSDN QQAVSLCYLN NNPGSWSHYH VGDFKVTNPD VSTGIKFSMT QIDCTHTKGG LCIDSVLILP KECAKEVIGS Q
101: PNLFDDGTKQ ELWIDKNTGR LCLSISSKAL RITGIDDRRY WSHIPTDESR FQSAAYVQQI WWFEVGGEFE IQFPSGTYSL FFRIQLGKTS KRLGRRICNS
201: EHIHGWDIKP VRFQLATSDN QQAVSLCYLN NNPGSWSHYH VGDFKVTNPD VSTGIKFSMT QIDCTHTKGG LCIDSVLILP KECAKEVIGS Q
Arabidopsis Description
AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.