Factsheet for PGSC0003DMT400096249

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
plasma membrane 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g056680.1.1	Tomato	cytosol	59.38	85.39
PGSC0003DMT400043441	Potato	cytosol	64.45	63.22
PGSC0003DMT400043434	Potato	cytosol	60.94	58.65
PGSC0003DMT400083888	Potato	cytosol	58.59	56.82
PGSC0003DMT400076213	Potato	cytosol	40.23	44.21
VIT_05s0051g00080.t01	Wine grape	cytosol	40.62	39.39
PGSC0003DMT400027718	Potato	cytosol	45.31	38.67
PGSC0003DMT400034146	Potato	cytosol	24.61	38.18
PGSC0003DMT400031292	Potato	cytosol	44.14	38.05
PGSC0003DMT400061566	Potato	cytosol	42.58	37.07
PGSC0003DMT400060018	Potato	cytosol	44.53	36.42
PGSC0003DMT400063740	Potato	cytosol	40.62	36.24
PGSC0003DMT400034143	Potato	cytosol	23.05	35.98
PGSC0003DMT400063744	Potato	cytosol	39.45	35.82
PGSC0003DMT400054296	Potato	cytosol	43.36	34.47
PGSC0003DMT400061562	Potato	cytosol	42.97	33.43
PGSC0003DMT400014139	Potato	cytosol	41.02	33.23
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	27.34	31.25
PGSC0003DMT400071397	Potato	cytosol	23.83	21.18
PGSC0003DMT400058590	Potato	plastid	23.83	21.11
PGSC0003DMT400010881	Potato	plastid	23.44	20.76
PGSC0003DMT400028899	Potato	cytosol	21.88	19.05
PGSC0003DMT400026564	Potato	cytosol	21.88	18.98
PGSC0003DMT400006947	Potato	cytosol	21.88	18.73
PGSC0003DMT400037131	Potato	cytosol	21.48	18.58
PGSC0003DMT400072413	Potato	cytosol	21.09	18.49

Protein Annotations

EnsemblPlants:PGSC0003DMT400096249	EnsemblPlantsGene:PGSC0003DMG400045820	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	PFAM:PF14299	PGSC:PGSC0003DMG400045820	SEG:seg
SUPFAM:SSF81383	UniParc:UPI0002952AB5	UniProt:M1DY15	MapMan:35.1	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400045820]

Coordinates

chr4:+:49316531..49326210

Molecular Weight (calculated)

28854.6 Da

IEP (calculated)

8.606

GRAVY (calculated)

-0.280

Length

256 amino acids

Sequence
(BLAST)

001: MDHFPEGCIS KILSLTSPKD AARSSAVSHI FMSAAESDNV WETFVPSDYQ QAISGSRSLM VFPSKKQLYF SLCDSPILLD GGKLSLSLDK ETGGKCLMVA
101: ARNLGIMWGG TPAYWEWLSH SDARFSEVAK LKRISWLDIR GKIGTRMLSK RTSYCAYLVF KLEDGFYGLI NVKAVVRFAD TESDHEVKKR AKVVHFSEQG
201: SRARPPLIRS DGWMELKMGN FFNDTGEDGD VEARLMQIRQ NWKHGLIVQG IEFRPE

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.