Factsheet for VIT_05s0051g00080.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400096249	Potato	cytosol	39.39	40.62
PGSC0003DMT400043441	Potato	cytosol	40.15	40.61
Solyc12g098190.1.1	Tomato	cytosol	40.15	40.61
PGSC0003DMT400083888	Potato	cytosol	39.77	39.77
Solyc12g044930.1.1	Tomato	cytosol	38.64	38.93
KRH55670	Soybean	cytosol	14.39	38.78
VIT_00s0214g00130.t01	Wine grape	cytosol	40.53	38.63
PGSC0003DMT400043434	Potato	cytosol	38.26	37.97
VIT_14s0060g01990.t01	Wine grape	cytosol	39.77	37.91
VIT_14s0060g02020.t01	Wine grape	cytosol	40.15	37.19
VIT_14s0060g02000.t01	Wine grape	cytosol	40.53	37.15
Solyc12g098200.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular	35.98	35.71
Solyc04g056680.1.1	Tomato	cytosol	23.86	35.39
KRH55667	Soybean	cytosol	35.23	35.23
PGSC0003DMT400076213	Potato	cytosol	30.68	34.76
KRH55669	Soybean	cytosol	34.09	34.09
Solyc12g096890.1.1	Tomato	cytosol	20.45	33.75
VIT_00s0214g00150.t01	Wine grape	cytosol	38.64	33.33
VIT_00s0214g00160.t01	Wine grape	cytosol	39.02	32.91
VIT_00s0214g00060.t01	Wine grape	cytosol	35.23	32.4
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	38.64	29.23
VIT_00s0214g00090.t01	Wine grape	cytosol	36.36	28.49
PGSC0003DMT400034143	Potato	cytosol	15.15	24.39
Solyc05g053620.2.1	Tomato	cytosol	15.15	24.24
PGSC0003DMT400034146	Potato	cytosol	15.15	24.24
VIT_16s0100g00520.t01	Wine grape	cytosol	23.48	22.22
VIT_15s0048g01930.t01	Wine grape	cytosol	23.48	21.45
VIT_02s0025g04380.t01	Wine grape	cytosol	25.0	21.36
VIT_08s0007g04190.t01	Wine grape	cytosol	23.11	20.4

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100254528	wikigene:100254528	MapMan:35.1	ProteinID:CCB57491	ProteinID:CCB57491.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6HS32	EMBL:FN596241	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100254528	wikigene:LOC100254528	PFAM:PF00646	PFAM:PF14299
InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6	SUPFAM:SSF81383	UniParc:UPI00019833B4
ArrayExpress:VIT_05s0051g00080	EnsemblPlantsGene:VIT_05s0051g00080	EnsemblPlants:VIT_05s0051g00080.t01	RefSeq:XP_002282712	RefSeq:XP_002282712.1	SEG:seg

Description

No Description!

Coordinates

chr5:-:10434238..10435268

Molecular Weight (calculated)

29951.9 Da

IEP (calculated)

6.366

GRAVY (calculated)

-0.390

Length

264 amino acids

Sequence
(BLAST)

001: MEGVKCITEL PEECMSHILS LTSPRDAARS AVLSSEFRSA ANSDVVWGSF LPSGFEEIIS KLESPLVFSS KKDLYLHFCN GPFLLKDNTK SFWLDKATGK
101: KCYMLGGREL SISLENVTSY WRWMPQPSSR VPAVAKLMID CSLKIKGKMK SRMLSPSTTY VGYLLFKVAS PEEVCVRWGW NAGLGGYGGD FRRVHTSEQQ
201: QQYEEEVPHM RKDGWLELEM GSFFNDKNED DELEMEMRNF HIRTPKSGLI LEGVELRPTP TPTP

Best Arabidopsis Sequence Match ( AT2G02240.1 )
(BLAST)

001: MCGQHYTSII SSITTEASFE RVRTHEFIKF SKHKRFDQRH RSMMGQYHSG GEIVSPGTSP FDVLPEDCIS NIISFTSPRD ACVAASVSKT FESAVSSDCV
101: WDKFLPPEYE SLVSRSRVFA SKKELYFALC HNPVLIEDGK KSFWLEKASG KRCIMLSSKE LWITWGSSPE YWQWISIPES RFNKIAELLD VCWFEIRGKT
201: SARVLSPGTR YSAYIVFKTK DRCPGLGHLP VEVGLGLVGQ ESSKRFIYFI GPRDRRGRRE TRDVTKPDQR EDGWMEAELG EFFNEERCDE IEFSVIEIKS
301: PSWKSGLIIQ GIEFRPTKSQ

Arabidopsis Description

MEE66F-box protein At2g02240 [Source:UniProtKB/Swiss-Prot;Acc:Q3E6P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.