Factsheet for VIT_15s0048g01930.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48244	Soybean	cytosol	66.78	68.68
KRH65151	Soybean	cytosol	66.44	68.33
CDY42484	Canola	cytosol	64.01	64.91
HORVU2Hr1G094960.4	Barley	cytosol	43.94	64.14
CDX89095	Canola	cytosol	62.98	63.64
HORVU1Hr1G048690.1	Barley	peroxisome	37.37	63.53
Bra014456.1-P	Field mustard	cytosol	62.63	63.29
AT3G61060.2	Thale cress	cytosol	63.67	63.23
VIT_02s0025g04380.t01	Wine grape	cytosol	67.47	63.11
Solyc01g091700.2.1	Tomato	cytosol	62.63	63.07
GSMUA_Achr1P03900_001	Banana	cytosol	63.67	63.01
PGSC0003DMT400071397	Potato	cytosol	62.28	62.5
VIT_16s0100g00520.t01	Wine grape	cytosol	60.21	62.37
PGSC0003DMT400026564	Potato	cytosol	63.32	62.03
Solyc10g017960.1.1	Tomato	cytosol	62.63	61.99
GSMUA_Achr11P...	Banana	cytosol	60.9	61.54
Os09t0525300-01	Rice	cytosol	59.52	61.21
GSMUA_Achr4P27200_001	Banana	cytosol	60.21	60.63
GSMUA_Achr5P03300_001	Banana	cytosol	60.9	60.48
GSMUA_Achr4P24870_001	Banana	cytosol	63.32	60.4
GSMUA_Achr7P05860_001	Banana	cytosol	59.17	58.97
Os03t0116700-01	Rice	cytosol, extracellular	60.55	58.92
Zm00001d029673_P001	Maize	plasma membrane	59.52	58.11
GSMUA_Achr3P12400_001	Banana	cytosol	57.79	57.99
TraesCS5D01G319500.1	Wheat	cytosol	57.44	57.84
EER94629	Sorghum	plasma membrane	60.21	57.81
TraesCS5B01G313700.1	Wheat	cytosol	57.44	57.64
HORVU5Hr1G080530.1	Barley	cytosol	57.09	57.49
TraesCS6A01G256100.1	Wheat	cytosol	59.17	57.38
TraesCS6D01G237300.1	Wheat	cytosol	59.17	57.38
TraesCS2A01G400100.1	Wheat	cytosol	59.17	57.38
TraesCS1D01G187700.1	Wheat	cytosol, plasma membrane	59.52	57.33
TraesCS5A01G312700.1	Wheat	cytosol	56.75	57.14
TraesCS6B01G269300.1	Wheat	cytosol	58.82	57.05
TraesCS2D01G397700.1	Wheat	cytosol	58.82	57.05
TraesCS1B01G196400.1	Wheat	cytosol, plasma membrane	59.17	57.0
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	59.86	56.91
Os02t0675800-01	Rice	cytosol	58.48	56.9
KXG31015	Sorghum	cytosol	59.17	56.81
Zm00001d021224_P001	Maize	cytosol	58.13	56.76
HORVU1Hr1G048700.4	Barley	cytosol, nucleus, plasma membrane	59.17	56.62
TraesCS2B01G418200.2	Wheat	cytosol	59.17	56.44
GSMUA_Achr11P...	Banana	cytosol	35.29	56.35
TraesCS1A01G188700.1	Wheat	plasma membrane	59.17	56.25
EER99217	Sorghum	cytosol	58.13	56.19
Zm00001d027361_P001	Maize	cytosol	57.79	56.04
EER95641	Sorghum	cytosol	56.75	55.78
Zm00001d051447_P002	Maize	cytosol	56.75	55.41
VIT_08s0007g04190.t01	Wine grape	cytosol	56.4	54.52
EES11284	Sorghum	cytosol	58.82	54.31
TraesCS4B01G356300.1	Wheat	cytosol	56.75	53.42
Os10t0522400-01	Rice	cytosol	30.45	53.33
TraesCS5A01G525700.1	Wheat	cytosol	56.4	53.27
TraesCS4D01G350000.1	Wheat	cytosol	55.71	52.44
HORVU4Hr1G086110.1	Barley	cytosol	26.64	50.66
Zm00001d026078_P001	Maize	cytosol	48.44	48.44
Zm00001d021854_P001	Maize	cytosol	13.84	45.45
Zm00001d024256_P001	Maize	cytosol, mitochondrion	38.75	44.98
Zm00001d035636_P001	Maize	plastid	37.02	41.0
HORVU2Hr1G049730.1	Barley	cytosol	23.88	40.59
HORVU5Hr1G055050.1	Barley	mitochondrion	23.53	40.0
Os02t0224900-01	Rice	endoplasmic reticulum, extracellular	29.41	35.87
VIT_00s0214g00130.t01	Wine grape	cytosol	23.88	24.91
VIT_14s0060g02020.t01	Wine grape	cytosol	24.22	24.56
VIT_00s0214g00060.t01	Wine grape	cytosol	24.22	24.39
VIT_14s0060g02000.t01	Wine grape	cytosol	24.22	24.31
VIT_05s0051g00080.t01	Wine grape	cytosol	21.45	23.48
VIT_14s0060g01990.t01	Wine grape	cytosol	22.49	23.47
VIT_00s0214g00150.t01	Wine grape	cytosol	24.22	22.88
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	25.95	21.49
VIT_00s0214g00160.t01	Wine grape	cytosol	22.49	20.77
VIT_00s0214g00090.t01	Wine grape	cytosol	23.18	19.88

Protein Annotations

EntrezGene:100243753	wikigene:100243753	MapMan:19.2.2.8.1.4.6	ProteinID:CBI38772	ProteinID:CBI38772.3	UniProt:D7U7J3
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	EMBL:FN596739	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	EntrezGene:LOC100243753	wikigene:LOC100243753	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181
PANTHER:PTHR31960	PANTHER:PTHR31960:SF3	SUPFAM:SSF81383	UniParc:UPI00015CABF8	ArrayExpress:VIT_15s0048g01930	EnsemblPlantsGene:VIT_15s0048g01930
EnsemblPlants:VIT_15s0048g01930.t01	RefSeq:XP_002269833	RefSeq:XP_002269833.1	:	:	:

Description

No Description!

Coordinates

chr15:-:16042025..16045313

Molecular Weight (calculated)

32797.2 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.389

Length

289 amino acids

Sequence
(BLAST)

001: MGANISGIDA DTDGDNNPPS RPKLGDIPES CLALVLMNLD PPEICKLARL NRAFRGASAA DFIWEAKLPP NYRSLIQELK IFDEFSMNLR KKGIYARLCR
101: PNPFDGGTKE VWLDKRTGGV CFSISSKALT ITGIDDRRYW NHIPTEESRF QTVAYLQQTW WFEVDGEFEF RFPPGTYSLF FRLHLGRASK RLGRRVCNPE
201: HIHGWDIKPV KFQLTTSEGQ HAVSKCYLEN PGNWIHHHVG DFVVEQGDTA MKVKFSATQI DCTHTKGGVC VDSVLICPWS IGKEVRQHL

Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)

001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ

Arabidopsis Description

AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.