Factsheet for GSMUA_Achr3P12400_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P05860_001	Banana	cytosol	79.51	78.97
Os09t0525300-01	Rice	cytosol	63.89	65.48
TraesCS5D01G319500.1	Wheat	cytosol	63.19	63.41
TraesCS5B01G313700.1	Wheat	cytosol	63.19	63.19
TraesCS5A01G312700.1	Wheat	cytosol	62.85	63.07
HORVU5Hr1G080530.1	Barley	cytosol	62.85	63.07
EER99217	Sorghum	cytosol	64.93	62.54
Zm00001d021224_P001	Maize	cytosol	63.89	62.16
GSMUA_Achr1P03900_001	Banana	cytosol	62.5	61.64
GSMUA_Achr11P...	Banana	cytosol	60.42	60.84
GSMUA_Achr4P27200_001	Banana	cytosol	60.42	60.63
GSMUA_Achr5P03300_001	Banana	cytosol	60.76	60.14
GSMUA_Achr4P24870_001	Banana	cytosol	62.5	59.41
VIT_16s0100g00520.t01	Wine grape	cytosol	56.6	58.42
VIT_15s0048g01930.t01	Wine grape	cytosol	57.99	57.79
KRH65151	Soybean	cytosol	54.17	55.52
KRH03980	Soybean	cytosol, plastid	54.86	55.24
CDX89095	Canola	cytosol	54.51	54.9
CDY42484	Canola	cytosol	54.17	54.74
GSMUA_Achr11P...	Banana	cytosol	34.38	54.7
VIT_02s0025g04380.t01	Wine grape	cytosol	58.68	54.69
PGSC0003DMT400058590	Potato	plastid	54.86	54.67
Bra014456.1-P	Field mustard	cytosol	54.17	54.55
Solyc08g080360.2.1	Tomato	plastid	54.51	54.33
KRH09123	Soybean	cytosol	54.51	54.33
AT3G61060.2	Thale cress	cytosol	54.86	54.3
KRH48244	Soybean	cytosol	52.78	54.09
PGSC0003DMT400010881	Potato	plastid	53.47	53.29
KRG91447	Soybean	cytosol, plastid	54.17	53.24
Solyc01g091700.2.1	Tomato	cytosol	52.78	52.96
Solyc12g056410.1.1	Tomato	cytosol, plastid	53.12	52.94
KRH38594	Soybean	cytosol	53.12	52.94
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	54.17	52.7
KRH35368	Soybean	cytosol	54.51	52.68
CDY16361	Canola	extracellular	35.07	52.6
CDY57080	Canola	cytosol	51.39	52.48
Solyc03g026160.2.1	Tomato	cytosol, extracellular	27.43	51.97
PGSC0003DMT400071397	Potato	cytosol	51.74	51.74
Solyc10g017960.1.1	Tomato	cytosol	52.08	51.37
Bra019781.1-P	Field mustard	cytosol	51.04	51.22
CDX98047	Canola	cytosol	50.69	50.87
CDY49201	Canola	cytosol	50.35	50.0
Bra027618.1-P	Field mustard	cytosol	50.35	50.0
PGSC0003DMT400026564	Potato	cytosol	51.04	49.83
CDY45973	Canola	cytosol	50.0	49.66
CDY63226	Canola	plastid	50.0	49.66
CDY47354	Canola	cytosol	50.0	49.66
Bra027000.1-P	Field mustard	cytosol	50.0	49.66
CDY38901	Canola	cytosol	47.92	49.64
AT1G63090.1	Thale cress	cytosol	49.31	49.13
CDY32595	Canola	cytosol	48.96	48.79
Bra029137.1-P	Field mustard	cytosol	48.26	47.93
PGSC0003DMT400037131	Potato	cytosol	48.96	47.64
AT5G52120.1	Thale cress	cytosol	47.92	47.42
KRH57251	Soybean	plastid	54.51	46.04
Zm00001d024256_P001	Maize	cytosol, mitochondrion	39.24	45.38
AT1G12710.2	Thale cress	cytosol	51.74	44.74
Zm00001d035636_P001	Maize	plastid	38.19	42.15
GSMUA_Achr1P20450_001	Banana	plastid	24.65	27.52
GSMUA_Achr1P05750_001	Banana	cytosol	25.69	26.81
GSMUA_Achr5P10170_001	Banana	cytosol	14.58	26.25
GSMUA_Achr6P36620_001	Banana	cytosol	23.26	25.87
GSMUA_Achr1P05730_001	Banana	cytosol	23.96	25.84
GSMUA_Achr1P05720_001	Banana	cytosol	23.26	23.84
GSMUA_Achr8P03670_001	Banana	nucleus	23.61	23.78
GSMUA_Achr9P02770_001	Banana	nucleus	20.83	21.05

Protein Annotations

EnsemblPlants:GSMUA_Achr3P12400_001	EnsemblPlants:GSMUA_Achr3T12400_001	EnsemblPlantsGene:GSMUA_Achr3G12400_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000296A7B6
UniProt:M0SE07	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-box protein PP2-A13 [Source:GMGC_GENE;Acc:GSMUA_Achr3G12400_001]

Coordinates

chr3:-:9170255..9173542

Molecular Weight (calculated)

32462.3 Da

IEP (calculated)

8.784

GRAVY (calculated)

-0.135

Length

288 amino acids

Sequence
(BLAST)

001: MGNGNSSAAG LERASGRTGL GDLPESCVAG ILLRLDPPEI CRLARLCHTF RAAASSDVVW EAKLPGNYMY LLGKALGEDN SDGQKLSKKQ IFALLCRRNP
101: FNGAYMEFCL EKSRCLICMS ISSKAMSITG IDDRRYWNFI PTAESRFHMV AYLHQIWWLE VRGEVEFCFP EGIYSLFFRL HLGRAIRRLG RRVCSPEHIH
201: GWDKKPVRFQ LSTSDGQLAQ SKCYLDEPGS WLHYHVGDFA IRSSSAPIKI KFSMIQIDCT HTKGGLCVDS VSIWPKGFRP AIASYHLF

Best Arabidopsis Sequence Match ( AT1G12710.1 )
(BLAST)

001: MGVAHSDLHN DLSSSSCFGD RNILKPGLGD LPEACVAIIV ENLDPVEICR FSKLNRAFRG ASWADCVWES KLPQNYRDVL EKILGGFPEN LQKRHLYAFL
101: SRINSFDDAT KKVWIDKRTS GVCLSISAKG LSITGIDDRR YWSHIPTDES RFSSVAYLQQ IWWFEVDGEI DFPFPVGTYS IFFRLQLGRS GKWFGRRVCN
201: TEQVHGWDIK PVRFQLWTED GQYSSSQCML TERGNWIHYH AGDVVVRESN RSSTKIKFSM TQIDCTHTKG GLSLDSVVVY PSSCKDQLKR F

Arabidopsis Description

AtPP2-A12phloem protein 2-A12 [Source:TAIR;Acc:AT1G12710]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.