Factsheet for GSMUA_Achr8P03670_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P02770_001	Banana	nucleus	58.39	58.6
GSMUA_Achr1P20450_001	Banana	plastid	48.95	54.26
GSMUA_Achr6P36620_001	Banana	cytosol	48.95	54.05
GSMUA_Achr1P05750_001	Banana	cytosol	46.5	48.19
GSMUA_Achr1P05730_001	Banana	cytosol	42.66	45.69
GSMUA_Achr1P05720_001	Banana	cytosol	41.96	42.7
KRH33867	Soybean	cytosol	38.11	41.29
Bra035198.1-P	Field mustard	cytosol	36.71	41.02
CDX87293	Canola	cytosol	36.71	41.02
CDY39994	Canola	cytosol	36.36	40.62
AT1G80110.1	Thale cress	cytosol	36.36	40.47
VIT_14s0060g02020.t01	Wine grape	cytosol	38.81	38.95
VIT_14s0060g01990.t01	Wine grape	cytosol	37.41	38.63
VIT_14s0060g02000.t01	Wine grape	cytosol	38.81	38.54
GSMUA_Achr5P10170_001	Banana	cytosol	21.33	38.12
PGSC0003DMT400063740	Potato	cytosol	37.41	37.28
KRG96762	Soybean	cytosol	36.36	36.24
PGSC0003DMT400063744	Potato	cytosol	35.66	36.17
Solyc01g100000.2.1	Tomato	cytosol	34.27	36.16
KRH68481	Soybean	cytosol	19.93	36.08
KRH68480	Soybean	cytosol	36.01	35.89
Solyc01g100010.2.1	Tomato	cytosol	34.62	35.61
Solyc01g099990.2.1	Tomato	cytosol	36.01	35.52
GSMUA_Achr11P...	Banana	cytosol	18.88	29.83
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	26.92	26.01
GSMUA_Achr11P...	Banana	cytosol	24.83	24.83
GSMUA_Achr1P03900_001	Banana	cytosol	25.17	24.66
GSMUA_Achr4P27200_001	Banana	cytosol	24.48	24.39
GSMUA_Achr3P12400_001	Banana	cytosol	23.78	23.61
GSMUA_Achr5P03300_001	Banana	cytosol	23.78	23.37
GSMUA_Achr7P05860_001	Banana	cytosol	23.43	23.1
GSMUA_Achr4P24870_001	Banana	cytosol	23.78	22.44

Protein Annotations

EnsemblPlants:GSMUA_Achr8P03670_001	EnsemblPlants:GSMUA_Achr8T03670_001	EnsemblPlantsGene:GSMUA_Achr8G03670_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278
PANTHER:PTHR32278:SF2	PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI000295F740	UniProt:M0TMC0	MapMan:35.1	:	:

Description

Putative F-box protein PP2-B2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G03670_001]

Coordinates

chr8:+:2516086..2517530

Molecular Weight (calculated)

32598.4 Da

IEP (calculated)

4.625

GRAVY (calculated)

-0.534

Length

286 amino acids

Sequence
(BLAST)

001: MGMEKRRETE GGGELARIPE ECVVLVLSHT SPRDSCRSAL VSSAFLSAAN SDALWERFLP SDYADILSRA VHPVEYSSKK QLYIRLCDSI LLDDGKVSFR
101: LEKSTGGKCY MVSAESMTII WGYESRYWRW VPHPESRFAK VAELLSVCWL HIRGSMNCRL LSRRTRYVVC IVFKLAPGSH GLGDPPQKAS VKLGSYASES
201: FIRLQPDDED DDDDESEEED EEEKPAVEGE EAKRRLREDG WMEMELADFY TEEGDDGNVE VNLRETEGLN WKRGLIVQGL EFRPRI

Best Arabidopsis Sequence Match ( AT2G02250.1 )
(BLAST)

001: MIQSTMGHKQ SVDSRGKGRK VPGSSSMVQK HRVESSGGAI ISGPSLFDNL PEDCISNIIS FTSPRDACVA ASVSKTFESA VNSDSVWDKF LPSDYSSLVP
101: PSRVFSSKKE LYFAICDNPV LVEDGGKSFW LEKENGKKCF MLSPKKSMWI TWVSTPQYWR WISIPEARFE EVPELLNVCW FEVRGGMNTK ELSPGTRYSA
201: YIVFKTKNGC PNLGDVPVEA TVGLVGQESS QRHIYFVGPS DQRRDRETRD VTRPTKRKDG WMEAELGQFF NESGCDVVDT SILEIKTPYW KRGLIIQGIE
301: FRPTKSLFYI

Arabidopsis Description

PP2B2Putative F-box protein PP2-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.