Factsheet for GSMUA_Achr6P36620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
nucleus 1
peroxisome 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P20450_001	Banana	plastid	73.36	73.64
GSMUA_Achr1P05750_001	Banana	cytosol	69.88	65.58
GSMUA_Achr1P05730_001	Banana	cytosol	61.0	59.18
GSMUA_Achr1P05720_001	Banana	cytosol	59.46	54.8
GSMUA_Achr8P03670_001	Banana	nucleus	54.05	48.95
CDX87293	Canola	cytosol	46.72	47.27
Bra035198.1-P	Field mustard	cytosol	46.72	47.27
KRH33867	Soybean	cytosol	47.88	46.97
CDY39994	Canola	cytosol	45.56	46.09
GSMUA_Achr5P10170_001	Banana	cytosol	28.19	45.62
AT1G80110.1	Thale cress	cytosol	45.17	45.53
GSMUA_Achr9P02770_001	Banana	nucleus	49.42	44.91
VIT_14s0060g01990.t01	Wine grape	cytosol	47.88	44.77
VIT_14s0060g02020.t01	Wine grape	cytosol	48.65	44.21
PGSC0003DMT400063740	Potato	cytosol	48.65	43.9
Solyc01g099990.2.1	Tomato	cytosol	49.03	43.79
VIT_14s0060g02000.t01	Wine grape	cytosol	48.65	43.75
PGSC0003DMT400063744	Potato	cytosol	45.95	42.2
TraesCS6D01G366600.1	Wheat	cytosol	51.74	42.14
TraesCS6B01G421100.1	Wheat	cytosol	51.35	42.09
Os12t0131400-01	Rice	nucleus	48.65	41.72
HORVU6Hr1G089430.1	Barley	cytosol, plastid	50.97	41.64
Solyc01g100010.2.1	Tomato	cytosol	44.4	41.37
TraesCS7A01G371000.1	Wheat	cytosol	45.95	41.18
TraesCS5B01G558800.1	Wheat	nucleus	46.72	41.16
TraesCS6A01G381900.1	Wheat	cytosol	49.81	40.82
KRH68480	Soybean	cytosol	45.17	40.77
Solyc01g100000.2.1	Tomato	cytosol	42.47	40.59
KRH68481	Soybean	cytosol	24.71	40.51
KRG96762	Soybean	cytosol	44.79	40.42
TraesCS3B01G018900.1	Wheat	cytosol	46.33	40.0
TraesCS7D01G351500.1	Wheat	cytosol	44.4	39.93
TraesCS5B01G559800.1	Wheat	cytosol	46.33	39.74
Os02t0812500-01	Rice	cytosol	50.19	39.16
Zm00001d032787_P001	Maize	cytosol	44.4	39.12
Zm00001d051936_P001	Maize	cytosol	46.72	38.66
TraesCS7D01G518300.2	Wheat	cytosol	21.24	38.46
TraesCS4A01G319200.1	Wheat	cytosol	47.1	38.12
TraesCS7B01G205100.1	Wheat	cytosol	43.63	38.05
TraesCS5D01G566000.2	Wheat	cytosol	45.56	37.94
TraesCS7D01G300300.1	Wheat	cytosol	43.63	37.92
EES05994	Sorghum	cytosol	49.42	37.87
HORVU7Hr1G072570.3	Barley	cytosol	42.86	37.76
TraesCS5B01G560100.1	Wheat	cytosol	45.56	37.7
TraesCS7A01G530500.1	Wheat	extracellular	20.46	37.32
TraesCS3D01G079700.1	Wheat	cytosol	42.47	37.04
TraesCS5B01G560000.1	Wheat	cytosol	44.79	36.94
Os08t0150700-01	Rice	cytosol	42.47	36.79
TraesCS7A01G304800.1	Wheat	cytosol	42.08	36.7
Zm00001d018451_P001	Maize	cytosol	48.26	36.34
TraesCS3B01G094500.1	Wheat	cytosol	42.86	36.27
HORVU6Hr1G089480.1	Barley	cytosol, extracellular	23.94	36.26
HORVU3Hr1G014270.1	Barley	cytosol	43.24	35.9
Os04t0280500-00	Rice	cytosol	20.85	35.76
TraesCS3A01G079300.1	Wheat	cytosol	42.08	35.74
HORVU0Hr1G021610.3	Barley	cytosol	44.79	35.69
Zm00001d024621_P001	Maize	cytosol	42.08	35.5
TraesCS7D01G519100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	37.45	31.49
Os12t0129700-01	Rice	cytosol	45.17	31.37
TraesCS7D01G518400.1	Wheat	cytosol	37.45	30.5
TraesCS7B01G449100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	35.91	30.19
TraesCS7A01G531700.1	Wheat	cytosol	35.91	29.52
TraesCS7B01G448100.1	Wheat	cytosol, extracellular	35.91	29.52
GSMUA_Achr11P...	Banana	cytosol	20.46	29.28
OQU92610	Sorghum	mitochondrion	40.93	28.42
TraesCS7A01G530600.1	Wheat	cytosol, mitochondrion	37.07	27.99
GSMUA_Achr4P27200_001	Banana	cytosol	27.8	25.09
GSMUA_Achr5P03300_001	Banana	cytosol	27.41	24.4
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	27.8	24.32
GSMUA_Achr1P03900_001	Banana	cytosol	27.41	24.32
GSMUA_Achr7P05860_001	Banana	cytosol	27.03	24.14
GSMUA_Achr11P...	Banana	cytosol	26.25	23.78
GSMUA_Achr3P12400_001	Banana	cytosol	25.87	23.26
GSMUA_Achr4P24870_001	Banana	cytosol	25.48	21.78

Protein Annotations

EnsemblPlants:GSMUA_Achr6P36620_001	EnsemblPlants:GSMUA_Achr6T36620_001	EnsemblPlantsGene:GSMUA_Achr6G36620_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR32278	PFAM:PF14299	SEG:seg	SUPFAM:SSF81383
UniParc:UPI000296AAB2	UniProt:M0TDA4	MapMan:35.1	:	:	:

Description

Putative F-box protein At2g02240 [Source:GMGC_GENE;Acc:GSMUA_Achr6G36620_001]

Coordinates

chr6:+:34542498..34544005

Molecular Weight (calculated)

29089.6 Da

IEP (calculated)

6.045

GRAVY (calculated)

-0.234

Length

259 amino acids

Sequence
(BLAST)

001: MDRLPEGCVA HAIALTSPRD VCRFSAVSSA FRSAAAYDTV WDRFLPSDYR SILSRAVRPV VCSSKRDLFF RLCDSLLIDA GKMSFWLERS SGAKCYMLSA
101: RSLSITWGDT PQYWRWVPLS DCRFSEAAEL VNVCWLEIRG KIQSRMLSGR TTYAAYLIFR LADWSRGLGH PPQEASVTMG VQHSSTHVVR LQPNDSPSRE
201: AAAEEVGDAR DDGWMEAELG ELYIDEGEDG EVEMSLMEVR GGHWKKGLII QGIEIRPKA

Best Arabidopsis Sequence Match ( AT2G02240.1 )
(BLAST)

001: MCGQHYTSII SSITTEASFE RVRTHEFIKF SKHKRFDQRH RSMMGQYHSG GEIVSPGTSP FDVLPEDCIS NIISFTSPRD ACVAASVSKT FESAVSSDCV
101: WDKFLPPEYE SLVSRSRVFA SKKELYFALC HNPVLIEDGK KSFWLEKASG KRCIMLSSKE LWITWGSSPE YWQWISIPES RFNKIAELLD VCWFEIRGKT
201: SARVLSPGTR YSAYIVFKTK DRCPGLGHLP VEVGLGLVGQ ESSKRFIYFI GPRDRRGRRE TRDVTKPDQR EDGWMEAELG EFFNEERCDE IEFSVIEIKS
301: PSWKSGLIIQ GIEFRPTKSQ

Arabidopsis Description

MEE66F-box protein At2g02240 [Source:UniProtKB/Swiss-Prot;Acc:Q3E6P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.