Factsheet for GSMUA_Achr1P03900_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P24870_001	Banana	cytosol	79.11	76.24
GSMUA_Achr5P03300_001	Banana	cytosol	73.29	73.54
GSMUA_Achr4P27200_001	Banana	cytosol	72.26	73.52
GSMUA_Achr11P...	Banana	cytosol	71.92	73.43
GSMUA_Achr11P...	Banana	cytosol	44.18	71.27
HORVU2Hr1G094960.4	Barley	cytosol	46.58	68.69
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	66.44	63.82
VIT_15s0048g01930.t01	Wine grape	cytosol	63.01	63.67
TraesCS6A01G256100.1	Wheat	cytosol	64.38	63.09
TraesCS6D01G237300.1	Wheat	cytosol	64.38	63.09
Os02t0675800-01	Rice	cytosol	64.04	62.96
TraesCS2A01G400100.1	Wheat	cytosol	64.04	62.75
TraesCS6B01G269300.1	Wheat	cytosol	64.04	62.75
Zm00001d051447_P002	Maize	cytosol	63.36	62.5
GSMUA_Achr3P12400_001	Banana	cytosol	61.64	62.5
TraesCS2D01G397700.1	Wheat	cytosol	63.7	62.42
KXG31015	Sorghum	cytosol	64.04	62.13
GSMUA_Achr7P05860_001	Banana	cytosol	61.64	62.07
VIT_02s0025g04380.t01	Wine grape	cytosol	64.73	61.16
TraesCS2B01G418200.2	Wheat	cytosol	63.36	61.06
KRH48244	Soybean	cytosol	57.53	59.79
EES11284	Sorghum	cytosol	64.04	59.74
KRH65151	Soybean	cytosol	57.19	59.43
CDY42484	Canola	cytosol	57.53	58.95
VIT_16s0100g00520.t01	Wine grape	cytosol	56.16	58.78
Solyc08g080360.2.1	Tomato	plastid	57.88	58.48
CDX89095	Canola	cytosol	57.19	58.39
KRH03980	Soybean	cytosol, plastid	57.19	58.39
PGSC0003DMT400058590	Potato	plastid	57.53	58.13
Bra014456.1-P	Field mustard	cytosol	56.85	58.04
CDY57080	Canola	cytosol	55.48	57.45
PGSC0003DMT400010881	Potato	plastid	56.16	56.75
Solyc12g056410.1.1	Tomato	cytosol, plastid	56.16	56.75
Bra019781.1-P	Field mustard	cytosol	55.48	56.45
Os10t0522400-01	Rice	cytosol	31.85	56.36
AT3G61060.2	Thale cress	cytosol	56.16	56.36
CDX98047	Canola	cytosol	55.14	56.1
CDY16361	Canola	extracellular	36.64	55.73
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	56.16	55.41
Solyc03g026160.2.1	Tomato	cytosol, extracellular	28.77	55.26
PGSC0003DMT400026564	Potato	cytosol	55.82	55.25
Solyc10g017960.1.1	Tomato	cytosol	55.14	55.14
KRG91447	Soybean	cytosol, plastid	54.79	54.61
Zm00001d026078_P001	Maize	cytosol	53.77	54.33
PGSC0003DMT400071397	Potato	cytosol	53.42	54.17
KRH35368	Soybean	cytosol	55.14	54.03
Solyc01g091700.2.1	Tomato	cytosol	53.08	54.01
KRH38594	Soybean	cytosol	53.08	53.63
HORVU4Hr1G086110.1	Barley	cytosol	27.74	53.29
CDY45973	Canola	cytosol	52.74	53.1
Bra027000.1-P	Field mustard	cytosol	52.74	53.1
CDY63226	Canola	plastid	52.74	53.1
CDY47354	Canola	cytosol	52.74	53.1
KRH09123	Soybean	cytosol	52.4	52.94
CDY38901	Canola	cytosol	50.34	52.88
Bra027618.1-P	Field mustard	cytosol	52.4	52.76
CDY49201	Canola	cytosol	52.4	52.76
PGSC0003DMT400037131	Potato	cytosol	52.74	52.03
AT1G63090.1	Thale cress	cytosol	51.37	51.9
CDY32595	Canola	cytosol	51.37	51.9
AT5G52120.1	Thale cress	cytosol	51.37	51.55
Bra029137.1-P	Field mustard	cytosol	51.03	51.38
Zm00001d021854_P001	Maize	cytosol	14.73	48.86
KRH57251	Soybean	plastid	56.85	48.68
AT1G12710.2	Thale cress	cytosol	54.45	47.75
GSMUA_Achr1P20450_001	Banana	plastid	24.32	27.52
GSMUA_Achr6P36620_001	Banana	cytosol	24.32	27.41
GSMUA_Achr1P05750_001	Banana	cytosol	24.66	26.09
GSMUA_Achr5P10170_001	Banana	cytosol	14.04	25.62
GSMUA_Achr8P03670_001	Banana	nucleus	24.66	25.17
GSMUA_Achr1P05730_001	Banana	cytosol	22.26	24.34
GSMUA_Achr9P02770_001	Banana	nucleus	22.26	22.81
GSMUA_Achr1P05720_001	Banana	cytosol	21.92	22.78

Protein Annotations

EnsemblPlants:GSMUA_Achr1P03900_001	EnsemblPlants:GSMUA_Achr1T03900_001	EnsemblPlantsGene:GSMUA_Achr1G03900_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0002953244
UniProt:M0RWU8	MapMan:19.2.2.8.1.4.6	:	:	:	:

Description

F-box protein PP2-A13 [Source:GMGC_GENE;Acc:GSMUA_Achr1G03900_001]

Coordinates

chr1:-:3240134..3243539

Molecular Weight (calculated)

32725.1 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.224

Length

292 amino acids

Sequence
(BLAST)

001: MGAGASSITG PDGETGGHET GLGDLPESCV AAVLLHLDPP EICRAARLSR TFRGAASADF VWKAKLPENY VHLMELACGG KSPSSRKRRL FLKEIYARLC
101: RPNPLDGGTM EFWLEKNRGG VCMSISSKAL LITGIDDRRY WNYISTDESR FHTVAYLQQT WWFEVDGEID FCFPAGAYSL FFRLHLGRIS KRLGRRICSF
201: EHVHGWDTKP VHFQLSTSEG QIATSHRYLD EPGRWILCHA GDFVVENSNV STKLEFSMTQ IDCTHTKGGI CVDSVLIYPK GFMQEKVFTS SL

Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)

001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ

Arabidopsis Description

AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.