Factsheet for Zm00001d026078_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11284	Sorghum	cytosol	80.28	74.12
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	72.66	69.08
TraesCS2A01G400100.1	Wheat	cytosol	69.9	67.79
TraesCS2D01G397700.1	Wheat	cytosol	69.55	67.45
Zm00001d021854_P001	Maize	cytosol	20.07	65.91
TraesCS2B01G418200.2	Wheat	cytosol	68.86	65.68
HORVU2Hr1G094960.4	Barley	cytosol	43.25	63.13
Zm00001d051447_P002	Maize	cytosol	64.01	62.5
GSMUA_Achr11P...	Banana	cytosol	53.63	54.2
GSMUA_Achr1P03900_001	Banana	cytosol	54.33	53.77
GSMUA_Achr4P27200_001	Banana	cytosol	52.25	52.61
GSMUA_Achr5P03300_001	Banana	cytosol	52.6	52.23
GSMUA_Achr4P24870_001	Banana	cytosol	53.98	51.49
Zm00001d029673_P001	Maize	plasma membrane	51.9	50.68
KRH65151	Soybean	cytosol	49.13	50.53
Solyc03g026160.2.1	Tomato	cytosol, extracellular	25.95	49.34
Zm00001d027361_P001	Maize	cytosol	50.87	49.33
KRH48244	Soybean	cytosol	47.75	49.11
VIT_15s0048g01930.t01	Wine grape	cytosol	48.44	48.44
CDY42484	Canola	cytosol	47.4	48.07
Zm00001d021224_P001	Maize	cytosol	49.13	47.97
AT3G61060.2	Thale cress	cytosol	47.75	47.42
Solyc08g080360.2.1	Tomato	plastid	47.4	47.4
VIT_16s0100g00520.t01	Wine grape	cytosol	45.67	47.31
Bra014456.1-P	Field mustard	cytosol	46.71	47.2
CDX89095	Canola	cytosol	46.71	47.2
PGSC0003DMT400058590	Potato	plastid	47.06	47.06
PGSC0003DMT400010881	Potato	plastid	46.37	46.37
VIT_02s0025g04380.t01	Wine grape	cytosol	49.48	46.28
KRH03980	Soybean	cytosol, plastid	45.33	45.8
Solyc12g056410.1.1	Tomato	cytosol, plastid	45.67	45.67
KRG91447	Soybean	cytosol, plastid	46.02	45.39
CDY57080	Canola	cytosol	43.94	45.04
KRH35368	Soybean	cytosol	46.37	44.97
PGSC0003DMT400026564	Potato	cytosol	45.33	44.41
Bra027618.1-P	Field mustard	cytosol	44.29	44.14
CDY49201	Canola	cytosol	44.29	44.14
CDY47354	Canola	cytosol	44.29	44.14
KRH09123	Soybean	cytosol	43.94	43.94
CDY45973	Canola	cytosol	43.94	43.79
CDY16361	Canola	extracellular	29.07	43.75
Bra019781.1-P	Field mustard	cytosol	43.25	43.55
Bra027000.1-P	Field mustard	cytosol	43.6	43.45
KRH38594	Soybean	cytosol	43.25	43.25
CDX98047	Canola	cytosol	42.91	43.21
Solyc10g017960.1.1	Tomato	cytosol	43.6	43.15
CDY63226	Canola	plastid	43.25	43.1
CDY38901	Canola	cytosol	41.18	42.81
Solyc01g091700.2.1	Tomato	cytosol	41.87	42.16
PGSC0003DMT400071397	Potato	cytosol	41.87	42.01
AT5G52120.1	Thale cress	cytosol	42.21	41.92
AT1G63090.1	Thale cress	cytosol	41.87	41.87
PGSC0003DMT400037131	Potato	cytosol	42.56	41.55
CDY32595	Canola	cytosol	41.52	41.52
Bra029137.1-P	Field mustard	cytosol	41.52	41.38
AT1G12710.2	Thale cress	cytosol	44.64	38.74
Zm00001d024256_P001	Maize	cytosol, mitochondrion	33.22	38.55
KRH57251	Soybean	plastid	45.33	38.42
Zm00001d035636_P001	Maize	plastid	31.14	34.48
Zm00001d018452_P001	Maize	cytosol, extracellular	21.45	20.53
Zm00001d051936_P001	Maize	cytosol	21.45	19.81
Zm00001d018451_P001	Maize	cytosol	21.8	18.31
Zm00001d053172_P001	Maize	cytosol	18.34	17.91
Zm00001d032787_P001	Maize	cytosol	17.65	17.35
Zm00001d024621_P001	Maize	cytosol	16.95	15.96

Protein Annotations

EnsemblPlants:Zm00001d026078_P001	EnsemblPlants:Zm00001d026078_T001	EnsemblPlantsGene:Zm00001d026078	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR31960	PANTHER:PTHR31960:SF4	PFAM:PF14299
ProteinID:AQK45442.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0008453948	UniProt:A0A1D6JC37	MapMan:35.1

Description

F-box protein PP2-A13

Coordinates

chr10:-:137917308..137920458

Molecular Weight (calculated)

31848.4 Da

IEP (calculated)

6.861

GRAVY (calculated)

-0.294

Length

289 amino acids

Sequence
(BLAST)

001: MGVGASSVGA AEGCGRGWGP RHTSLGDMPE SCVAAVLLYL DPAEICQVAC LNRAFRGAAS ADCIWAAKLP ANHRYLAALA AAADDDDCSC GCDGVAAEGS
101: CSTVAIKKEL YARLCRPTPF DGGRNDRRYW SDLSTEESRF HSVAYLRQIW WLEVDGEIDF CFPAGSYSLF FRLHLGRPRT RRARRRGGSD NDIHGWDIRP
201: ARFRLSTSDH QQHTTASEAH ARLASPGRWV LYHVGDFAVS SPDEVTELRF SMMQIDCTHT KGGLCVDSVC IYPKRHGGYE EDCVFCQKI

Best Arabidopsis Sequence Match ( AT1G12710.1 )
(BLAST)

001: MGVAHSDLHN DLSSSSCFGD RNILKPGLGD LPEACVAIIV ENLDPVEICR FSKLNRAFRG ASWADCVWES KLPQNYRDVL EKILGGFPEN LQKRHLYAFL
101: SRINSFDDAT KKVWIDKRTS GVCLSISAKG LSITGIDDRR YWSHIPTDES RFSSVAYLQQ IWWFEVDGEI DFPFPVGTYS IFFRLQLGRS GKWFGRRVCN
201: TEQVHGWDIK PVRFQLWTED GQYSSSQCML TERGNWIHYH AGDVVVRESN RSSTKIKFSM TQIDCTHTKG GLSLDSVVVY PSSCKDQLKR F

Arabidopsis Description

AtPP2-A12phloem protein 2-A12 [Source:TAIR;Acc:AT1G12710]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.