Factsheet for Zm00001d053172_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG28410	Sorghum	cytosol	64.86	71.11
Zm00001d018452_P001	Maize	cytosol, extracellular	46.96	46.03
Bra035198.1-P	Field mustard	cytosol	33.78	39.06
CDX87293	Canola	cytosol	33.78	39.06
CDY39994	Canola	cytosol	33.78	39.06
GSMUA_Achr5P10170_001	Banana	cytosol	20.95	38.75
AT1G80110.1	Thale cress	cytosol	33.45	38.52
VIT_14s0060g02020.t01	Wine grape	cytosol	36.82	38.25
VIT_14s0060g02000.t01	Wine grape	cytosol	36.49	37.5
VIT_14s0060g01990.t01	Wine grape	cytosol	34.46	36.82
Zm00001d051936_P001	Maize	cytosol	38.18	36.1
PGSC0003DMT400063740	Potato	cytosol	34.46	35.54
KRH33867	Soybean	cytosol	31.08	34.85
Zm00001d018451_P001	Maize	cytosol	39.19	33.72
Solyc01g099990.2.1	Tomato	cytosol	32.77	33.45
PGSC0003DMT400063744	Potato	cytosol	31.76	33.33
Zm00001d032787_P001	Maize	cytosol	33.11	33.33
Solyc01g100010.2.1	Tomato	cytosol	31.08	33.09
Zm00001d024621_P001	Maize	cytosol	34.12	32.9
Solyc01g100000.2.1	Tomato	cytosol	29.39	32.1
KRG96762	Soybean	cytosol	30.74	31.71
KRH68480	Soybean	cytosol	30.41	31.36
KRH68481	Soybean	cytosol	14.53	27.22
Zm00001d021854_P001	Maize	cytosol	6.42	21.59
Zm00001d021224_P001	Maize	cytosol	20.95	20.95
Zm00001d029673_P001	Maize	plasma membrane	20.61	20.61
Zm00001d051447_P002	Maize	cytosol	19.59	19.59
Zm00001d027361_P001	Maize	cytosol	19.59	19.46
Zm00001d026078_P001	Maize	cytosol	17.91	18.34
Zm00001d024256_P001	Maize	cytosol, mitochondrion	15.2	18.07
Zm00001d035636_P001	Maize	plastid	14.86	16.86

Protein Annotations

EnsemblPlants:Zm00001d053172_P001	EnsemblPlants:Zm00001d053172_T001	EnsemblPlantsGene:Zm00001d053172	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR32278	PFAM:PF14299	ProteinID:AQK58866.1	SUPFAM:SSF81383
UniParc:UPI0008426448	UniProt:A0A1D6QMI9	MapMan:35.1	:	:	:

Description

F-box protein PP2-B10

Coordinates

chr4:+:217828727..217832507

Molecular Weight (calculated)

32528.6 Da

IEP (calculated)

4.855

GRAVY (calculated)

-0.152

Length

296 amino acids

Sequence
(BLAST)

001: MEGIQQLPAD VLVSVISRAA AGPRDACIAA TVSPAFRAAA DSDTVWSRFL PADLAPLVYP TPPPRSKKEL FLRLSETHAL VEDGLMSAWL DRETGAKSYM
101: IAARAMAIIW VDTPDYWRWI VREDSREAWV ARFIGGGFKL ASSGIRGELH GFSTCAELLA VCWLDISGCM PCRMLSGDTR YAAYLVFKMA DDCFGLDSPL
201: QEASVSVGEG GTSTAHWIRL QSYHVGDEEN GVTEEGAPPR LPHERPDGWM EVELGDWYNH GGDDDLVVRA SVKEARFGGN WKKGLIVQGL EIRPKN

Best Arabidopsis Sequence Match ( AT2G02250.1 )
(BLAST)

001: MIQSTMGHKQ SVDSRGKGRK VPGSSSMVQK HRVESSGGAI ISGPSLFDNL PEDCISNIIS FTSPRDACVA ASVSKTFESA VNSDSVWDKF LPSDYSSLVP
101: PSRVFSSKKE LYFAICDNPV LVEDGGKSFW LEKENGKKCF MLSPKKSMWI TWVSTPQYWR WISIPEARFE EVPELLNVCW FEVRGGMNTK ELSPGTRYSA
201: YIVFKTKNGC PNLGDVPVEA TVGLVGQESS QRHIYFVGPS DQRRDRETRD VTRPTKRKDG WMEAELGQFF NESGCDVVDT SILEIKTPYW KRGLIIQGIE
301: FRPTKSLFYI

Arabidopsis Description

PP2B2Putative F-box protein PP2-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.