Factsheet for Zm00001d027361_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95641	Sorghum	cytosol	88.25	89.46
Os03t0116700-01	Rice	cytosol, extracellular	78.86	79.12
Zm00001d029673_P001	Maize	plasma membrane	71.81	72.3
TraesCS5A01G525700.1	Wheat	cytosol	71.48	69.61
TraesCS4B01G356300.1	Wheat	cytosol	70.81	68.73
TraesCS4D01G350000.1	Wheat	cytosol	70.81	68.73
VIT_16s0100g00520.t01	Wine grape	cytosol	55.03	58.78
Solyc08g080360.2.1	Tomato	plastid	56.04	57.79
PGSC0003DMT400058590	Potato	plastid	56.04	57.79
VIT_15s0048g01930.t01	Wine grape	cytosol	56.04	57.79
Zm00001d021224_P001	Maize	cytosol	56.71	57.09
KRH48244	Soybean	cytosol	53.69	56.94
CDY16361	Canola	extracellular	36.58	56.77
KRH65151	Soybean	cytosol	53.36	56.58
CDY57080	Canola	cytosol	52.68	55.67
VIT_02s0025g04380.t01	Wine grape	cytosol	57.72	55.66
Solyc03g026160.2.1	Tomato	cytosol, extracellular	28.19	55.26
CDX89095	Canola	cytosol	53.02	55.24
Bra014456.1-P	Field mustard	cytosol	53.02	55.24
CDY42484	Canola	cytosol	52.68	55.09
PGSC0003DMT400010881	Potato	plastid	53.36	55.02
KRG91447	Soybean	cytosol, plastid	54.03	54.95
KRH03980	Soybean	cytosol, plastid	52.68	54.9
Solyc12g056410.1.1	Tomato	cytosol, plastid	52.68	54.33
AT3G61060.2	Thale cress	cytosol	53.02	54.3
Zm00001d051447_P002	Maize	cytosol	53.69	54.05
KRH35368	Soybean	cytosol	54.03	54.03
Bra019781.1-P	Field mustard	cytosol	52.01	54.01
CDX98047	Canola	cytosol	51.68	53.66
KRH09123	Soybean	cytosol	52.01	53.63
AT1G63090.1	Thale cress	cytosol	51.01	52.6
CDY63226	Canola	plastid	50.67	52.07
KRH38594	Soybean	cytosol	50.34	51.9
Bra027000.1-P	Field mustard	cytosol	50.34	51.72
CDY47354	Canola	cytosol	50.34	51.72
CDY45973	Canola	cytosol	50.34	51.72
Bra027618.1-P	Field mustard	cytosol	50.0	51.38
CDY49201	Canola	cytosol	50.0	51.38
Zm00001d026078_P001	Maize	cytosol	49.33	50.87
Solyc10g017960.1.1	Tomato	cytosol	49.66	50.68
PGSC0003DMT400071397	Potato	cytosol	48.66	50.35
PGSC0003DMT400037131	Potato	cytosol	50.0	50.34
Solyc01g091700.2.1	Tomato	cytosol	48.32	50.17
PGSC0003DMT400026564	Potato	cytosol	49.33	49.83
CDY38901	Canola	cytosol	45.97	49.28
CDY32595	Canola	cytosol	46.98	48.44
Bra029137.1-P	Field mustard	cytosol	46.31	47.59
AT5G52120.1	Thale cress	cytosol	45.64	46.74
KRH57251	Soybean	plastid	53.02	46.33
AT1G12710.2	Thale cress	cytosol	50.34	45.05
Zm00001d024256_P001	Maize	cytosol, mitochondrion	35.91	42.97
Zm00001d021854_P001	Maize	cytosol	12.08	40.91
Zm00001d035636_P001	Maize	plastid	34.23	39.08
Zm00001d018452_P001	Maize	cytosol, extracellular	24.16	23.84
Zm00001d024621_P001	Maize	cytosol	22.15	21.5
Zm00001d051936_P001	Maize	cytosol	22.48	21.41
Zm00001d018451_P001	Maize	cytosol	24.16	20.93
Zm00001d032787_P001	Maize	cytosol	20.13	20.41
Zm00001d053172_P001	Maize	cytosol	19.46	19.59

Protein Annotations

EMBL:BT062201	EnsemblPlants:Zm00001d027361_P001	EnsemblPlants:Zm00001d027361_T001	EnsemblPlantsGene:Zm00001d027361	EntrezGene:100286177	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR31960	PANTHER:PTHR31960:SF10
PFAM:PF14299	ProteinID:ONL92929.1	SUPFAM:SSF81383	UniParc:UPI0001948656	UniProt:C0HIP5	MapMan:19.2.2.8.1.4.6

Description

F-box protein PP2-A13

Coordinates

chr1:+:3741739..3744408

Molecular Weight (calculated)

32838.1 Da

IEP (calculated)

8.389

GRAVY (calculated)

-0.247

Length

298 amino acids

Sequence
(BLAST)

001: MGAGASGLAG AEPGGKVARG AGLGDLPELC TAEVLLRLGA PDICRLARLN LAFRGAAGAD FVWEAKLPGN YARLLRFVDE AEEEGGSGRD WSAVGRKDVF
101: ARLARPVPFD GGKREFWLEK NEGGICMALS SKALVITGID DRRYWINMPT SESRFHSTAY LQQIWWFEVV GEVDFCFPAG TAYSLYFRLH LGKSSTRFGR
201: RVCSSEQVHG WDKKPVRFQL STSDGQHAVS QCYLDEPGRW ILYHVGDFDA PPSSGQPTRL KFSLAQIDCT HTKGGLCVDS VLVYPKGFQP ERVVRARK

Best Arabidopsis Sequence Match ( AT1G12710.1 )
(BLAST)

001: MGVAHSDLHN DLSSSSCFGD RNILKPGLGD LPEACVAIIV ENLDPVEICR FSKLNRAFRG ASWADCVWES KLPQNYRDVL EKILGGFPEN LQKRHLYAFL
101: SRINSFDDAT KKVWIDKRTS GVCLSISAKG LSITGIDDRR YWSHIPTDES RFSSVAYLQQ IWWFEVDGEI DFPFPVGTYS IFFRLQLGRS GKWFGRRVCN
201: TEQVHGWDIK PVRFQLWTED GQYSSSQCML TERGNWIHYH AGDVVVRESN RSSTKIKFSM TQIDCTHTKG GLSLDSVVVY PSSCKDQLKR F

Arabidopsis Description

AtPP2-A12phloem protein 2-A12 [Source:TAIR;Acc:AT1G12710]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.