Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g091700.2.1 | Tomato | cytosol | 94.1 | 94.43 |
| PGSC0003DMT400026564 | Potato | cytosol | 72.92 | 71.19 |
| VIT_15s0048g01930.t01 | Wine grape | cytosol | 62.5 | 62.28 |
| KRH65151 | Soybean | cytosol | 59.38 | 60.85 |
| KRH48244 | Soybean | cytosol | 59.03 | 60.5 |
| HORVU1Hr1G048690.1 | Barley | peroxisome | 35.42 | 60.0 |
| AT3G61060.2 | Thale cress | cytosol | 59.72 | 59.11 |
| CDY42484 | Canola | cytosol | 57.64 | 58.25 |
| PGSC0003DMT400058590 | Potato | plastid | 56.94 | 56.75 |
| Bra014456.1-P | Field mustard | cytosol | 56.25 | 56.64 |
| CDX89095 | Canola | cytosol | 56.25 | 56.64 |
| HORVU2Hr1G094960.4 | Barley | cytosol | 38.19 | 55.56 |
| GSMUA_Achr4P27200_001 | Banana | cytosol | 54.17 | 54.36 |
| PGSC0003DMT400010881 | Potato | plastid | 53.82 | 53.63 |
| GSMUA_Achr1P03900_001 | Banana | cytosol | 54.17 | 53.42 |
| GSMUA_Achr7P05860_001 | Banana | cytosol | 53.12 | 52.76 |
| Os09t0525300-01 | Rice | cytosol | 51.39 | 52.67 |
| GSMUA_Achr4P24870_001 | Banana | cytosol | 54.86 | 52.15 |
| GSMUA_Achr11P... | Banana | cytosol | 51.74 | 52.1 |
| TraesCS5A01G312700.1 | Wheat | cytosol | 51.74 | 51.92 |
| GSMUA_Achr5P03300_001 | Banana | cytosol | 52.43 | 51.89 |
| Os03t0116700-01 | Rice | cytosol, extracellular | 53.47 | 51.85 |
| KXG31015 | Sorghum | cytosol | 54.17 | 51.83 |
| GSMUA_Achr3P12400_001 | Banana | cytosol | 51.74 | 51.74 |
| TraesCS5B01G313700.1 | Wheat | cytosol | 51.74 | 51.74 |
| TraesCS5D01G319500.1 | Wheat | cytosol | 51.39 | 51.57 |
| Os02t0675800-01 | Rice | cytosol | 52.78 | 51.18 |
| Zm00001d021224_P001 | Maize | cytosol | 52.08 | 50.68 |
| HORVU5Hr1G080530.1 | Barley | cytosol | 50.35 | 50.52 |
| Zm00001d051447_P002 | Maize | cytosol | 51.74 | 50.34 |
| TraesCS6A01G256100.1 | Wheat | cytosol | 52.08 | 50.34 |
| TraesCS6D01G237300.1 | Wheat | cytosol | 52.08 | 50.34 |
| TraesCS1D01G187700.1 | Wheat | cytosol, plasma membrane | 52.08 | 50.0 |
| HORVU1Hr1G048700.4 | Barley | cytosol, nucleus, plasma membrane | 52.43 | 50.0 |
| TraesCS6B01G269300.1 | Wheat | cytosol | 51.74 | 50.0 |
| Os04t0571300-01 | Rice | cytosol, mitochondrion, peroxisome | 52.43 | 49.67 |
| TraesCS1B01G196400.1 | Wheat | cytosol, plasma membrane | 51.74 | 49.67 |
| TraesCS2A01G400100.1 | Wheat | cytosol | 51.39 | 49.66 |
| EER95641 | Sorghum | cytosol | 50.69 | 49.66 |
| TraesCS2D01G397700.1 | Wheat | cytosol | 51.04 | 49.33 |
| Zm00001d029673_P001 | Maize | plasma membrane | 50.69 | 49.32 |
| EER94629 | Sorghum | plasma membrane | 51.39 | 49.17 |
| EER99217 | Sorghum | cytosol | 51.04 | 49.16 |
| TraesCS1A01G188700.1 | Wheat | plasma membrane | 51.74 | 49.01 |
| Zm00001d027361_P001 | Maize | cytosol | 50.35 | 48.66 |
| TraesCS2B01G418200.2 | Wheat | cytosol | 50.69 | 48.18 |
| GSMUA_Achr11P... | Banana | cytosol | 30.21 | 48.07 |
| PGSC0003DMT400037131 | Potato | cytosol | 49.31 | 47.97 |
| PGSC0003DMT400028899 | Potato | cytosol | 47.92 | 46.94 |
| PGSC0003DMT400072413 | Potato | cytosol | 47.57 | 46.92 |
| EES11284 | Sorghum | cytosol | 50.69 | 46.65 |
| PGSC0003DMT400006947 | Potato | cytosol | 47.92 | 46.15 |
| TraesCS4B01G356300.1 | Wheat | cytosol | 48.61 | 45.6 |
| TraesCS4D01G350000.1 | Wheat | cytosol | 47.92 | 44.95 |
| TraesCS5A01G525700.1 | Wheat | cytosol | 47.57 | 44.77 |
| Zm00001d026078_P001 | Maize | cytosol | 42.01 | 41.87 |
| Os10t0522400-01 | Rice | cytosol | 23.96 | 41.82 |
| HORVU4Hr1G086110.1 | Barley | cytosol | 21.88 | 41.45 |
| Zm00001d024256_P001 | Maize | cytosol, mitochondrion | 34.72 | 40.16 |
| Zm00001d035636_P001 | Maize | plastid | 33.33 | 36.78 |
| Zm00001d021854_P001 | Maize | cytosol | 11.11 | 36.36 |
| Os02t0224900-01 | Rice | endoplasmic reticulum, extracellular | 26.74 | 32.49 |
| HORVU5Hr1G055050.1 | Barley | mitochondrion | 19.1 | 32.35 |
| HORVU2Hr1G049730.1 | Barley | cytosol | 18.75 | 31.76 |
| PGSC0003DMT400083888 | Potato | cytosol | 24.65 | 26.89 |
| PGSC0003DMT400043434 | Potato | cytosol | 24.65 | 26.69 |
| PGSC0003DMT400043441 | Potato | cytosol | 22.57 | 24.9 |
| PGSC0003DMT400076213 | Potato | cytosol | 20.14 | 24.89 |
| PGSC0003DMT400063740 | Potato | cytosol | 24.65 | 24.74 |
| PGSC0003DMT400063744 | Potato | cytosol | 23.61 | 24.11 |
| PGSC0003DMT400027718 | Potato | cytosol | 25.0 | 24.0 |
| PGSC0003DMT400096249 | Potato | cytosol | 21.18 | 23.83 |
| PGSC0003DMT400060018 | Potato | cytosol | 23.96 | 22.04 |
| PGSC0003DMT400061566 | Potato | cytosol | 22.22 | 21.77 |
| PGSC0003DMT400031292 | Potato | cytosol | 21.53 | 20.88 |
| PGSC0003DMT400054296 | Potato | cytosol | 22.57 | 20.19 |
| PGSC0003DMT400061562 | Potato | cytosol | 21.53 | 18.84 |
| PGSC0003DMT400097622 | Potato | cytosol, mitochondrion | 14.58 | 18.75 |
| PGSC0003DMT400014139 | Potato | cytosol | 19.79 | 18.04 |
| PGSC0003DMT400034143 | Potato | cytosol | 9.03 | 15.85 |
| PGSC0003DMT400034146 | Potato | cytosol | 7.99 | 13.94 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400071397 | EnsemblPlantsGene:PGSC0003DMG400027777 | EntrezGene:102589819 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:PP2-like | PANTHER:PTHR31960 | PANTHER:PTHR31960:SF3 |
| PFAM:PF14299 | PFscan:PS50181 | PGSC:PGSC0003DMG400027777 | RefSeq:XP_006339463.1 | SUPFAM:SSF81383 | UniParc:UPI000296047D |
| UniProt:M1CNQ0 | MapMan:19.2.2.8.1.4.6 | : | : | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027777]
Coordinates
chr1:+:71161448..71163580
Molecular Weight (calculated)
32613.0 Da
IEP (calculated)
7.384
GRAVY (calculated)
-0.276
Length
288 amino acids
Sequence
(BLAST)
(BLAST)
001: MGANVSSIDT NCDDGLNYLP FKPKLDDIPE ACVALLLSYL DPPEICKLSR INRVFHAASS ADFIWEPKLP SNYNYILQQL LPLKVDDALC KKDLFAKLSS
101: PRSFDGGTKQ VWIDKKNGGV CLAISSKGMT ITGIDDRRYW NHIPTDESRF QTVAYLQQIW WLEVDGDLEF QFPEGTYSLF FRLQLGKATK RHKRRACSYE
201: HVHGWDLKPV QFQLTTGDDC RVTSRCYLDN LGTWMQHHVG DFVVKDATVP TKMKYSLTQI DCTHTKGGLC VDSVLICPSS LAKQLTSC
101: PRSFDGGTKQ VWIDKKNGGV CLAISSKGMT ITGIDDRRYW NHIPTDESRF QTVAYLQQIW WLEVDGDLEF QFPEGTYSLF FRLQLGKATK RHKRRACSYE
201: HVHGWDLKPV QFQLTTGDDC RVTSRCYLDN LGTWMQHHVG DFVVKDATVP TKMKYSLTQI DCTHTKGGLC VDSVLICPSS LAKQLTSC
001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ
Arabidopsis Description
AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.