Factsheet for PGSC0003DMT400061566

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054296	Potato	cytosol	79.59	72.67
PGSC0003DMT400061562	Potato	cytosol	81.29	72.64
Solyc11g006740.1.1	Tomato	cytosol	45.92	72.58
PGSC0003DMT400027718	Potato	cytosol	59.86	58.67
PGSC0003DMT400014139	Potato	cytosol	53.74	50.0
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	35.37	46.43
PGSC0003DMT400043441	Potato	cytosol	38.1	42.91
KRH55670	Soybean	cytosol	14.29	42.86
PGSC0003DMT400043434	Potato	cytosol	38.78	42.86
PGSC0003DMT400096249	Potato	cytosol	37.07	42.58
PGSC0003DMT400083888	Potato	cytosol	37.41	41.67
PGSC0003DMT400031292	Potato	cytosol	39.12	38.72
PGSC0003DMT400063740	Potato	cytosol	36.73	37.63
KRH55667	Soybean	cytosol	33.67	37.5
PGSC0003DMT400060018	Potato	cytosol	39.46	37.06
PGSC0003DMT400076213	Potato	cytosol	29.25	36.91
PGSC0003DMT400063744	Potato	cytosol	35.37	36.88
KRH55669	Soybean	cytosol	32.99	36.74
PGSC0003DMT400034143	Potato	cytosol	14.63	26.22
PGSC0003DMT400058590	Potato	plastid	23.47	23.88
PGSC0003DMT400028899	Potato	cytosol	23.81	23.81
PGSC0003DMT400006947	Potato	cytosol	23.47	23.08
PGSC0003DMT400034146	Potato	cytosol	12.93	23.03
PGSC0003DMT400072413	Potato	cytosol	22.45	22.6
PGSC0003DMT400010881	Potato	plastid	22.11	22.49
PGSC0003DMT400071397	Potato	cytosol	21.77	22.22
PGSC0003DMT400026564	Potato	cytosol	21.77	21.69
PGSC0003DMT400037131	Potato	cytosol	21.43	21.28

Protein Annotations

EnsemblPlants:PGSC0003DMT400061566	EnsemblPlantsGene:PGSC0003DMG400023965	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	PGSC:PGSC0003DMG400023965	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI000296A6D8	UniProt:M1C7Q0	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400023965]

Coordinates

chr11:-:5541229..5543161

Molecular Weight (calculated)

33538.5 Da

IEP (calculated)

4.402

GRAVY (calculated)

-0.232

Length

294 amino acids

Sequence
(BLAST)

001: MKCNGKSHSM EKEQSEENEV IIIFECFYCE IEFVSLPEGC IAEIFAFTSP PDVCRFSLVS TSLHSAADSD SVWAKFLPSD YPSIIAKSPT SIPDFRSLKD
101: AYVYLADHPL LIDEGRKTFS LDKWTGKKCY FLGARDLNIS WGDTPEYWEW VSVPESRFPE VAQLKLVWWL QNWGTIRTGT LSPLTSYTAY FVYKLEDDSY
201: GFDVRHVEVS VGISGVESAN VRIAFLNPDH PSNMELDHKP VPKLRDDDWF VLELGNFLTE SEDDCIELRM EDVKPSCHPK GLIVEGFEMR PTIA

Best Arabidopsis Sequence Match ( AT1G80110.1 )
(BLAST)

001: MNNLPEDCIA KILSLTTPLD VCRLSAVSSI FRSAAGSDDV WNHFLPADFP AGFAAPAGLP TRKQLFFSLV DNPLLINGTL LSFSLERKSG NKCYMMAARA
101: LNIVWGHEQR YWHWISLPNT RFGEVAELIM VWWLEITGKI NITLLSDDTL YAAYFVFKWN HSPYGFRQPV ETSLVLADTE STDNVVQPSM ISLMQDSGGE
201: EGQSPVLRRD GWYEVELGQF FKRRGDLGEI EMSLKETKGP YEKKGLIVYG IEIRPVP

Arabidopsis Description

PP2B11F-box protein PP2-B11 [Source:UniProtKB/Swiss-Prot;Acc:Q949S5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.