Factsheet for PGSC0003DMT400054296

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400061562	Potato	cytosol	93.79	91.79
PGSC0003DMT400061566	Potato	cytosol	72.67	79.59
Solyc11g006740.1.1	Tomato	cytosol	40.06	69.35
PGSC0003DMT400027718	Potato	cytosol	57.76	62.0
PGSC0003DMT400014139	Potato	cytosol	51.86	52.85
PGSC0003DMT400097622	Potato	cytosol, mitochondrion	34.78	50.0
PGSC0003DMT400043441	Potato	cytosol	35.71	44.06
PGSC0003DMT400096249	Potato	cytosol	34.47	43.36
PGSC0003DMT400043434	Potato	cytosol	35.71	43.23
KRH55670	Soybean	cytosol	13.04	42.86
PGSC0003DMT400083888	Potato	cytosol	34.78	42.42
PGSC0003DMT400031292	Potato	cytosol	38.82	42.09
PGSC0003DMT400063744	Potato	cytosol	34.78	39.72
PGSC0003DMT400060018	Potato	cytosol	38.51	39.62
PGSC0003DMT400076213	Potato	cytosol	28.57	39.48
PGSC0003DMT400063740	Potato	cytosol	35.09	39.37
KRH55667	Soybean	cytosol	30.75	37.5
KRH55669	Soybean	cytosol	30.12	36.74
PGSC0003DMT400034143	Potato	cytosol	13.98	27.44
PGSC0003DMT400006947	Potato	cytosol	23.29	25.08
PGSC0003DMT400028899	Potato	cytosol	22.67	24.83
PGSC0003DMT400072413	Potato	cytosol	22.36	24.66
PGSC0003DMT400034146	Potato	cytosol	12.42	24.24
PGSC0003DMT400058590	Potato	plastid	21.74	24.22
PGSC0003DMT400010881	Potato	plastid	20.81	23.18
PGSC0003DMT400071397	Potato	cytosol	20.19	22.57
PGSC0003DMT400026564	Potato	cytosol	20.19	22.03
PGSC0003DMT400037131	Potato	cytosol	19.25	20.95

Protein Annotations

EnsemblPlants:PGSC0003DMT400054296	EnsemblPlantsGene:PGSC0003DMG400021065	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	PGSC:PGSC0003DMG400021065	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI00029514F9	UniProt:M1BW28	MapMan:35.1	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021065]

Coordinates

chr11:-:5568462..5570345

Molecular Weight (calculated)

36837.5 Da

IEP (calculated)

4.377

GRAVY (calculated)

-0.303

Length

322 amino acids

Sequence
(BLAST)

001: MEKEQSEENE SNNTRTCLSM LPEGCIAEIF AFTSPPDVCR FSLISTSLRS AADSDSVWAK FLPSDYPSII AKSPTPIPDF RSLKDVYVYL SDHPILIDEG
101: RKIFSLNKWT GKKCYFLGAR DLNIVWSDTP DAWEWTSVPE SRFPEVAQLK FIRWLQIWGT IRAGILSPLT SYTAYFVYKL EDDSYGFDTR HMEVSVGISG
201: VESANVRIAF LHLNPRFIPL EMYTSPYTPP SPYIEYCWMG PLWPGIDYDP PEDVDWDHHP SNLKLDKPVP KLRDDGWFEL ELGNFFTENE DDCIELRMED
301: VKTGCTKGGL IVEGIEIRPT IA

Best Arabidopsis Sequence Match ( AT1G09155.1 )
(BLAST)

001: MMLPEACVAT ILSFTTPADT ISSAAVSSVF RVAGDSDFVW EKFLPTDYCH VISRSTDPHR IFSSKKELYR CLCESILIDN GRKIFKIEKL SGKISYILSS
101: RDLSITWSDQ RHYWSWSPRS DSRFSEGVQL IMTDWLEIIG KIQTGALSPN TNYGAYLIMK VTSRAYGLDL VPAETSIKVG NGEKKIKSTY LSCLDNKKQQ
201: MERVFYGQRE QRMATHEVVR SHRREPEVRD DGWMEIELGE FETGSGEGDD DKEVVMSLTE VKGYQLKGGI AIDGIEVRPK PLKVRAGTN

Arabidopsis Description

PP2B15F-box protein PP2-B15 [Source:UniProtKB/Swiss-Prot;Acc:O80494]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.