Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- golgi 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G086110.1 | Barley | cytosol | 63.64 | 69.08 |
| Zm00001d021854_P001 | Maize | cytosol | 28.48 | 53.41 |
| Os03t0116700-01 | Rice | cytosol, extracellular | 69.09 | 38.38 |
| GSMUA_Achr1P03900_001 | Banana | cytosol | 56.36 | 31.85 |
| GSMUA_Achr4P27200_001 | Banana | cytosol | 54.55 | 31.36 |
| VIT_15s0048g01930.t01 | Wine grape | cytosol | 53.33 | 30.45 |
| GSMUA_Achr11P... | Banana | cytosol | 52.73 | 30.42 |
| GSMUA_Achr4P24870_001 | Banana | cytosol | 54.55 | 29.7 |
| Os04t0571300-01 | Rice | cytosol, mitochondrion, peroxisome | 54.55 | 29.61 |
| GSMUA_Achr5P03300_001 | Banana | cytosol | 52.12 | 29.55 |
| Os04t0280500-00 | Rice | cytosol | 26.67 | 29.14 |
| Os02t0675800-01 | Rice | cytosol | 52.12 | 28.96 |
| Os09t0525300-01 | Rice | cytosol | 47.88 | 28.11 |
| KRG91447 | Soybean | cytosol, plastid | 49.7 | 27.99 |
| KRH65151 | Soybean | cytosol | 47.27 | 27.76 |
| CDY57080 | Canola | cytosol | 47.27 | 27.66 |
| VIT_16s0100g00520.t01 | Wine grape | cytosol | 46.67 | 27.6 |
| KRH35368 | Soybean | cytosol | 49.7 | 27.52 |
| VIT_02s0025g04380.t01 | Wine grape | cytosol | 51.52 | 27.51 |
| KRH48244 | Soybean | cytosol | 46.67 | 27.4 |
| PGSC0003DMT400010881 | Potato | plastid | 47.88 | 27.34 |
| Solyc08g080360.2.1 | Tomato | plastid | 47.88 | 27.34 |
| PGSC0003DMT400058590 | Potato | plastid | 47.27 | 26.99 |
| KRH09123 | Soybean | cytosol | 47.27 | 26.99 |
| CDX98047 | Canola | cytosol | 46.67 | 26.83 |
| Bra019781.1-P | Field mustard | cytosol | 46.67 | 26.83 |
| KRH38594 | Soybean | cytosol | 46.67 | 26.64 |
| CDX89095 | Canola | cytosol | 46.06 | 26.57 |
| Bra014456.1-P | Field mustard | cytosol | 46.06 | 26.57 |
| CDY42484 | Canola | cytosol | 45.45 | 26.32 |
| Solyc12g056410.1.1 | Tomato | cytosol, plastid | 46.06 | 26.3 |
| AT3G61060.2 | Thale cress | cytosol | 46.06 | 26.12 |
| CDY38901 | Canola | cytosol | 42.42 | 25.18 |
| KRH03980 | Soybean | cytosol, plastid | 43.64 | 25.17 |
| CDY32595 | Canola | cytosol | 43.64 | 24.91 |
| CDY45973 | Canola | cytosol | 43.03 | 24.48 |
| Bra027000.1-P | Field mustard | cytosol | 43.03 | 24.48 |
| AT5G52120.1 | Thale cress | cytosol | 43.03 | 24.4 |
| Solyc01g091700.2.1 | Tomato | cytosol | 42.42 | 24.39 |
| Bra029137.1-P | Field mustard | cytosol | 42.42 | 24.14 |
| CDY63226 | Canola | plastid | 42.42 | 24.14 |
| PGSC0003DMT400071397 | Potato | cytosol | 41.82 | 23.96 |
| AT1G63090.1 | Thale cress | cytosol | 41.82 | 23.88 |
| CDY47354 | Canola | cytosol | 41.82 | 23.79 |
| PGSC0003DMT400026564 | Potato | cytosol | 42.42 | 23.73 |
| Solyc10g017960.1.1 | Tomato | cytosol | 41.82 | 23.63 |
| CDY49201 | Canola | cytosol | 41.21 | 23.45 |
| Bra027618.1-P | Field mustard | cytosol | 41.21 | 23.45 |
| AT1G12710.2 | Thale cress | cytosol | 44.24 | 21.92 |
| PGSC0003DMT400037131 | Potato | cytosol | 38.79 | 21.62 |
| KRH57251 | Soybean | plastid | 44.24 | 21.41 |
| Os02t0813000-00 | Rice | cytosol | 23.64 | 16.96 |
| Os08t0150700-01 | Rice | cytosol | 29.09 | 16.05 |
| Os12t0131400-01 | Rice | nucleus | 26.67 | 14.57 |
| Os02t0813350-01 | Rice | cytosol | 24.85 | 13.8 |
| Os02t0813166-00 | Rice | cytosol, plastid | 19.39 | 12.21 |
| CDY16361 | Canola | extracellular | 13.94 | 11.98 |
| Os02t0812500-01 | Rice | cytosol | 23.64 | 11.75 |
| Os02t0224900-01 | Rice | endoplasmic reticulum, extracellular | 14.55 | 10.13 |
| Os12t0129700-01 | Rice | cytosol | 22.42 | 9.92 |
| Os02t0812600-00 | Rice | extracellular | 24.24 | 8.77 |
| Solyc03g026160.2.1 | Tomato | cytosol, extracellular | 0.61 | 0.66 |
| Os02t0813083-00 | Rice | extracellular | 0.0 | 0.0 |
Protein Annotations
| EMBL:AK071847 | EnsemblPlants:Os10t0522400-01 | EnsemblPlantsGene:Os10g0522400 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | PANTHER:PTHR31960 | PANTHER:PTHR31960:SF10 | ProteinID:ABG66198.1 | ProteinID:BAF27010.1 | ProteinID:BAT11717.1 |
| SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0000DB47DA | UniProt:Q109D8 | MapMan:35.1 | : |
Description
F-box protein 560Cyclin-like F-box domain containing protein. (Os10t0522400-01)
Coordinates
chr10:+:20252191..20253575
Molecular Weight (calculated)
17810.3 Da
IEP (calculated)
8.850
GRAVY (calculated)
-0.292
Length
165 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGVSGLFG LGGDEGETSA AVGGAAAAGL GDLPELCAAE VLLRLDAPEI CRLARLNHAF RGAAGADFVW EAKLPENYRY LMSFVEGGGG GDDGRQLRRR
101: RWRPAGKKEI YARLARPVPF DGGSKEFWLE KSKGRVCMAL SSKSLVITGI DDRRYWQHIP TAESR
101: RWRPAGKKEI YARLARPVPF DGGSKEFWLE KSKGRVCMAL SSKSLVITGI DDRRYWQHIP TAESR
001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ
Arabidopsis Description
AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.