Factsheet for Os02t0812600-00

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plasma membrane, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 28232208

msms PMID: 28232208 doi

Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim

Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0813000-00	Rice	cytosol	34.65	68.7
Os02t0813350-01	Rice	cytosol	39.69	60.94
Os02t0813166-00	Rice	cytosol, plastid	30.04	52.29
KXG31332	Sorghum	cytosol	34.21	51.15
KXG31333	Sorghum	cytosol	32.46	48.68
Os02t0813083-00	Rice	extracellular	11.84	47.37
Bra035198.1-P	Field mustard	cytosol	25.44	45.31
CDX87293	Canola	cytosol	25.44	45.31
CDY39994	Canola	cytosol	25.0	44.53
GSMUA_Achr5P10170_001	Banana	cytosol	15.57	44.38
AT1G80110.1	Thale cress	cytosol	23.25	41.25
Os02t0812500-01	Rice	cytosol	29.82	40.96
VIT_14s0060g02020.t01	Wine grape	cytosol	25.44	40.7
VIT_14s0060g01990.t01	Wine grape	cytosol	24.34	40.07
Os12t0131400-01	Rice	nucleus	26.32	39.74
VIT_14s0060g02000.t01	Wine grape	cytosol	24.56	38.89
PGSC0003DMT400063740	Potato	cytosol	24.34	38.68
KRH33867	Soybean	cytosol	22.37	38.64
Solyc01g099990.2.1	Tomato	cytosol	24.34	38.28
Os08t0150700-01	Rice	cytosol	24.34	37.12
KRH68480	Soybean	cytosol	22.37	35.54
KRG96762	Soybean	cytosol	22.15	35.19
Solyc01g100000.2.1	Tomato	cytosol	20.61	34.69
Os04t0280500-00	Rice	cytosol	11.18	33.77
Solyc01g100010.2.1	Tomato	cytosol	19.96	32.73
PGSC0003DMT400063744	Potato	cytosol	20.18	32.62
KRH68481	Soybean	cytosol	10.96	31.65
Os12t0129700-01	Rice	cytosol	24.56	30.03
Os10t0522400-01	Rice	cytosol	8.77	24.24
Os02t0675800-01	Rice	cytosol	15.13	23.23
Os03t0116700-01	Rice	cytosol, extracellular	14.91	22.9
Os09t0525300-01	Rice	cytosol	13.6	22.06
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	14.69	22.04
Os02t0224900-01	Rice	endoplasmic reticulum, extracellular	6.36	12.24

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:4331106	UniProt:B9F463	ProteinID:BAS81530.1	ProteinID:EEE58028.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
EnsemblPlantsGene:Os02g0812600	EnsemblPlants:Os02t0812600-00	PFAM:PF12937	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181
PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	SUPFAM:SSF81383	UniParc:UPI00019333F9	RefSeq:XP_015624566.1	SEG:seg

Description

F-box protein 116F-box domain, cyclin-like domain containing protein. (Os02t0812600-00)

Coordinates

chr2:+:34798281..34801473

Molecular Weight (calculated)

50303.9 Da

IEP (calculated)

4.796

GRAVY (calculated)

-0.136

Length

456 amino acids

Sequence
(BLAST)

001: MEEEAAAAAC EIARLPEELL VAALSLTSPR DACSAAAVCR DFRAAADSDA VWSRFLPRDL PRLADGELSP PPPSTKGLFL RLSAAPLLLP HELTSMWLER
101: EKGGKCYMLS ARALQITWGD TPRYWRWIPL TDSRLEGAEL LSVCWLEIHG KILSKMLSRN TNYAAYLVYR IADRSYGLDF PFQEASVSIG GSTTTRQVGS
201: VERRLKRRCS HALVLAEDIE HPQKRSDGWM ELKLGELYNE EGDDGEVCIS FRETEGHWKR GLVVQGIEIR PKKTLTSNCL ACSHEKPSYS LLTTSRSSKE
301: EIFLTDGLTS MWLDMETGFK CYMLSARALQ LANSTDTWRL ISLTGASRFS EVIELPACYE LVICGKIPCK MLPGNTNYAA YIVFVVVDDS FGLATILDAS
401: VSVGGSLCTT RQVCFDSTSS LSADEHFVED NIEVPQDGSV ILPQERDDGL DGAGGG

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.