Factsheet for Os12t0131400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0129700-01	Rice	cytosol	67.22	54.42
GSMUA_Achr1P20450_001	Banana	plastid	42.38	49.61
GSMUA_Achr6P36620_001	Banana	cytosol	41.72	48.65
GSMUA_Achr1P05750_001	Banana	cytosol	41.06	44.93
Bra035198.1-P	Field mustard	cytosol	37.42	44.14
CDX87293	Canola	cytosol	37.42	44.14
CDY39994	Canola	cytosol	37.42	44.14
Os02t0813083-00	Rice	extracellular	16.56	43.86
Os02t0813000-00	Rice	cytosol	32.45	42.61
GSMUA_Achr1P05730_001	Banana	cytosol	37.42	42.32
Os02t0813350-01	Rice	cytosol	40.4	41.08
AT1G80110.1	Thale cress	cytosol	34.77	40.86
VIT_14s0060g02020.t01	Wine grape	cytosol	37.75	40.0
Os02t0813166-00	Rice	cytosol, plastid	34.11	39.31
KRH33867	Soybean	cytosol	34.11	39.02
GSMUA_Achr1P05720_001	Banana	cytosol	35.76	38.43
VIT_14s0060g01990.t01	Wine grape	cytosol	34.77	37.91
PGSC0003DMT400063740	Potato	cytosol	35.43	37.28
VIT_14s0060g02000.t01	Wine grape	cytosol	35.43	37.15
KRH68481	Soybean	cytosol	18.87	36.08
Solyc01g099990.2.1	Tomato	cytosol	34.44	35.86
Os08t0150700-01	Rice	cytosol	35.43	35.79
Os04t0280500-00	Rice	cytosol	17.55	35.1
Os02t0812500-01	Rice	cytosol	38.41	34.94
KRG96762	Soybean	cytosol	33.11	34.84
KRH68480	Soybean	cytosol	32.45	34.15
Solyc01g100010.2.1	Tomato	cytosol	30.13	32.73
PGSC0003DMT400063744	Potato	cytosol	30.46	32.62
Solyc01g100000.2.1	Tomato	cytosol	28.48	31.73
Os10t0522400-01	Rice	cytosol	14.57	26.67
Os02t0812600-00	Rice	extracellular	39.74	26.32
Os09t0525300-01	Rice	cytosol	22.19	23.84
Os03t0116700-01	Rice	cytosol, extracellular	23.18	23.57
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	20.86	20.72
Os02t0675800-01	Rice	cytosol	19.54	19.87
Os02t0224900-01	Rice	endoplasmic reticulum, extracellular	10.6	13.5

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:9271663	ProteinID:ABA96399.2	EMBL:AK243367	ProteinID:BAT15748.1
ProteinID:EEE52714.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	EnsemblPlantsGene:Os12g0131400	EnsemblPlants:Os12t0131400-01	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181
PANTHER:PTHR32278	PANTHER:PTHR32278:SF5	UniProt:Q2QY61	SUPFAM:SSF81383	UniParc:UPI0000D89C01	RefSeq:XP_015618242.1

Description

F-box protein 640Hypothetical conserved gene. (Os12t0131400-01)

Coordinates

chr12:-:1514456..1519357

Molecular Weight (calculated)

34391.6 Da

IEP (calculated)

5.883

GRAVY (calculated)

-0.394

Length

302 amino acids

Sequence
(BLAST)

001: MKQSRREEVD DDVSVGKKEE EAGYCSSSSI SRLPEACLAH AISFTTPTDA CRCSAVSADF QAAASSNAVW ERFLPPDYHS ILARADDPVD FTTSNKELFL
101: SLAQDHVLLD QRSKSFWLER TSGAKCYLLS SRSLEIAWGD DARYWRWIYL PDSRFERVAA LVFVCWFHLR GRINCRELSP NTRYIVYLIF KLADKSYGLD
201: CRTQEAYITM DDQVVSAKRT VSLHPRTQET PLDMGRSEVG RAEETVSYPR ERGDGWMEVQ LGHFYNHQGD GMVVINLQEI VQLNSKKGLI LEGMEIRHSI
301: GP

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.