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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plasma membrane 1
  • plastid 1
  • mitochondrion 1
  • cytoskeleton 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytoskeleton, cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, plasma membrane, plastid
PProwler:mitochondrion
WoLF PSORT:cytoskeleton
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G237300.1 Wheat cytosol 81.82 81.54
TraesCS6B01G269300.1 Wheat cytosol 81.82 81.54
TraesCS6A01G256100.1 Wheat cytosol 81.82 81.54
KXG31015 Sorghum cytosol 79.46 78.41
Zm00001d051447_P002 Maize cytosol 78.11 78.38
Os04t0571300-01 Rice cytosol, mitochondrion, peroxisome 76.09 74.34
GSMUA_Achr4P27200_001 Banana cytosol 61.95 64.11
GSMUA_Achr1P03900_001 Banana cytosol 62.96 64.04
GSMUA_Achr11P... Banana cytosol 60.94 63.29
GSMUA_Achr5P03300_001 Banana cytosol 61.95 63.23
Os03t0116700-01 Rice cytosol, extracellular 60.27 60.27
GSMUA_Achr4P24870_001 Banana cytosol 59.93 58.75
VIT_15s0048g01930.t01 Wine grape cytosol 56.9 58.48
KRH48244 Soybean cytosol 55.22 58.36
Solyc08g080360.2.1 Tomato plastid 56.57 58.13
VIT_16s0100g00520.t01 Wine grape cytosol 54.55 58.06
PGSC0003DMT400010881 Potato plastid 56.23 57.79
PGSC0003DMT400058590 Potato plastid 56.23 57.79
KRH65151 Soybean cytosol 54.21 57.3
Os09t0525300-01 Rice cytosol 54.21 57.3
Solyc12g056410.1.1 Tomato cytosol, plastid 55.22 56.75
VIT_02s0025g04380.t01 Wine grape cytosol 58.92 56.63
Solyc03g026160.2.1 Tomato cytosol, extracellular 28.96 56.58
CDY57080 Canola cytosol 52.19 54.96
KRH03980 Soybean cytosol, plastid 52.19 54.2
CDY42484 Canola cytosol 51.85 54.04
AT3G61060.2 Thale cress cytosol 52.86 53.95
Bra019781.1-P Field mustard cytosol 51.85 53.66
CDX89095 Canola cytosol 51.52 53.5
CDX98047 Canola cytosol 51.52 53.31
Solyc01g091700.2.1 Tomato cytosol 51.52 53.31
Bra014456.1-P Field mustard cytosol 51.18 53.15
Solyc10g017960.1.1 Tomato cytosol 52.19 53.08
PGSC0003DMT400071397 Potato cytosol 51.18 52.78
CDY47354 Canola cytosol 51.52 52.76
CDY49201 Canola cytosol 51.52 52.76
Bra027618.1-P Field mustard cytosol 51.52 52.76
AT1G63090.1 Thale cress cytosol 51.18 52.6
KRG91447 Soybean cytosol, plastid 51.52 52.22
PGSC0003DMT400026564 Potato cytosol 51.85 52.2
Os10t0522400-01 Rice cytosol 28.96 52.12
CDY16361 Canola extracellular 33.67 52.08
KRH35368 Soybean cytosol 51.85 51.68
CDY38901 Canola cytosol 48.15 51.44
PGSC0003DMT400037131 Potato cytosol 51.18 51.35
KRH09123 Soybean cytosol 49.49 50.87
AT5G52120.1 Thale cress cytosol 49.16 50.17
Bra027000.1-P Field mustard cytosol 48.82 50.0
CDY63226 Canola plastid 48.82 50.0
CDY45973 Canola cytosol 48.82 50.0
KRH38594 Soybean cytosol 48.48 49.83
CDY32595 Canola cytosol 48.48 49.83
Bra029137.1-P Field mustard cytosol 48.48 49.66
AT1G12710.2 Thale cress cytosol 51.85 46.25
KRH57251 Soybean plastid 51.85 45.16
Os02t0224900-01 Rice endoplasmic reticulum, extracellular 29.29 36.71
Os04t0280500-00 Rice cytosol 13.8 27.15
Os02t0813000-00 Rice cytosol 19.87 25.65
Os02t0813350-01 Rice cytosol 22.56 22.56
Os02t0813166-00 Rice cytosol, plastid 18.52 20.99
Os02t0812500-01 Rice cytosol 22.9 20.48
Os08t0150700-01 Rice cytosol 19.87 19.73
Os12t0131400-01 Rice nucleus 19.87 19.54
Os02t0813083-00 Rice extracellular 6.06 15.79
Os02t0812600-00 Rice extracellular 23.23 15.13
Os12t0129700-01 Rice cytosol 17.85 14.21
Protein Annotations
MapMan:19.2.2.8.1.4.6EntrezGene:4330301EMBL:AK100726ProteinID:BAD29529.1ProteinID:BAF09636.1ProteinID:BAS80268.1
ProteinID:EEE57565.1InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR001810EnsemblPlantsGene:Os02g0675800EnsemblPlants:Os02t0675800-01PFAM:PF14299InterPro:PP2-likePFscan:PS50181
PANTHER:PTHR31960PANTHER:PTHR31960:SF8UniProt:Q6EP91SUPFAM:SSF81383UniParc:UPI00003CE9D3RefSeq:XP_015627320.1
SEG:seg:::::
Description
F-box protein 105Cyclin-like F-box domain containing protein. (Os02t0675800-01)
Coordinates
chr2:+:27548414..27551592
Molecular Weight (calculated)
33312.6 Da
IEP (calculated)
6.664
GRAVY (calculated)
-0.267
Length
297 amino acids
Sequence
(BLAST)
001: MGSGSSILGA DGEWGVTSLG DMPESCVAAV LLYLDPPEIC QVARLNRAFR GAASADCVWA GKLPVNYRYL LAFAAAADDE GGDGGHGNGK RSSPSSKKDI
101: FARLCRPTPF DFGNKEFWID KNKGGICLSI SSKAMVITGI DDRRYWSQLA TEESRFHHIA YLQQIWWLEV DGELDFCFPA GSYSIFFRLH LGRPYRRMGR
201: RICGTEQVHG WEAKPTRFQL STSDEQHATS EYYLEQEGSW ILYHVGDFVV LNSDELMKLK FSMLQIDCTH TKGGLCVDSV LIYPKGYRHE KANIVHM
Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)
001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ
Arabidopsis Description
AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.